Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00823 ATGGATCTTCGTTCTTCAATTTACTTCCCGATTTTTGGAAATTCAATGGAGTCTGATTCTGATTCGGATGGCTCTCATGTCTCCGCTACTCCTCCCAGAGAATCAAAGCCTCCATCGCCTCCACCTGCTCCTGCTCCATCCTTCTCCAACAAAGGAGGAATTGGGACTATAGCTTCCTCCATCTCTTCCCGCTCAAAATTGATTCCGAAACCTCCCAGATCTTCCTCCAAATGTAGGCCTCAAAAGTTGCCTCAGAAGAACGATTGCGTTTACGATCAGCATGATTCTCTGCTCGATGCGTTTCCCCTCCCCAGTTTTCCGTTTCACATCCGCCATCCGTCTGAGATGAATCGTTCAGCTTCCTCCATTCAGTCCATTGAAAACCTTCCGGCAGGATTCTTCTCAAAGTCAGCTTCTTTTTCGAAAATTCGACGTTCTGTAATCAATTTCAATATCGTCGATGAGGATGTACCTCAATCGTTATCATCTAATTCTCAGACGAAGGGTGATAATGATGTCACTGGTTGTTTGCCTGCCGATAGCATCCCACCTGAAGTAAAGAGTGAATCCAAAAGTTGTGAGAATTCAAAGAAAGAGTTCAGGAAGCATCATAATCTTATAGGCGGTAGTGTAGCTATGCCTCCAGTTAAATTGCGAAAGTGTAGCGGCGAGGGGAACTTCGTGAAGCTCAATTTGAATGGGAAGAAACGTAAATTTTCAGGCAAGGGTAAAAAGAAAGGGAATTATGTTTTGAGTGGTCGCAGGTACTATAGAAGAGGTAAGAAAAAATTTAAAGCCGGTGAAGGCCCTGAGTCAGAGAGTATATTTGACGAGGAGGGTTTGATTATGGATACCAAACAGCAGAAACAGAGCCAGGAGAGTGAAAGATCAAAATTTGATGTCGAAATGGCTGCTGCAGATGCTATTTTGATGGTCCGAAATGAGCCATCTGATGATAATTTAAGGAAGCTCCTGAAACTAACTCATGGATATGACTCATTTCGTGATGGTCAGTTGGAGGCAATTAAGTTGGTGCTAGATGGAAAATCGACAATGCTTGTTTTACCAACTGGTTCTGGTAAATCTCTTTGTTATCAGATACCTGCAATGATTTTGCCTGGCATAACTCTGGTTGTGAGTCCATTAGTTGCACTTATGATCGATCAGCTTAAACAGCTACCCCATGGGATTCAGGGTGGTCTTTTATGTAGCACTCAAAAACCTGAAGAAGTGTCTGAGACTCTGAGGCTGCTTCGTCAAGGAACCATGAAAGTGCTTTTTGTTTCTCCGGAGAGGTTTCTGAATGCAGATTTTCTATCAATGTTCTCGACTAGTCTGCCTATATCTCTTGTTGTGGTGGATGAAGCGCATTGCATATCTGAATGGTCGCACAATTTTCGACCTGCTTACATGAGGATAAGAGCATCTTTTCTCCGCGATCAACTCAAAATTAATTGCGTTCTTGCAATGACTGCAACTGCAACAACTTCAACTTTGCATGCAGTTATTTCTGCTCTAGAAATTCCTCCTGAAAATCTCATTCTAAAATCCACATTACCAAAAAATCTACAGTTGTCATTATCAACAACTAAAAACAGATCCAAAGATCTACTGGCATTGATCAAATCTCCTCCCTTCTCGGAAGTTCGAAGCATCATTATATACTGCAAGTTTCAGTCCGATACTGATATAATGAGCAAATGCTTGTGTGATAACAACATTTCATCAAAGAGTTATCACAGTGGTCTCCCTGCAAATGACCGTCACCGTATACAGGAGCTGTTTTGTTCAAACAAGATTAGAGTGGTTGTAGCAACTGTGGCATTTGGCATGGGGCTGGATAAGAGGGATGTTGGAGCTGTAATTCATTTGAGCTTGCCAGAAAGTTTGGAGGAGTATGTTCAAGAACAAACTTTTCTTAAGGAAATAGGGCGGGCAGGACGGGATGGGAGTTTGTCTTTTTGTCATCTCTTTTTGGACGATCACATTTATTTCAAGCTTCGAAGTCTAATGCACAGTGATGGAGTTGATGAATATGTTGTGAACAAATTTCTGTCTCAAATTTTCATTGATGACATGAATTCTTGTGGAAAGATGTGTTATTTGGTCAAAGAATCTGCATCTCTCAAGTTTGACATGAAGGCAGAGGTTATATTTACACTTTTAACACACTTGGAGTTGGGTGAAGTGCAATATTTACGATTGCTTCCACAGTCAAATGTATCTTGCTCTTTGAGTTTCCACAAGACTTCGCCTGTGTTGCTTGCTGAGAACGATGTAATTGTTGCAGAACTATTGAAGCAGCCTGAAATTAAGCAAGGTCAATATAAGTTTAATATACCTGCGGTGGTGAATGGCACAGGGGTTACAGCTACTGATCTAACAAATCATTTACAAAATCTTAAGTTGAAGGGAGAAATAACGTATGAGTTAACAGACATGGCCTTTTGCTATACAATGTTGGAAATACCTTCTGACTTTTGTTCCTTATCTGCACATCTAACCAGATGGTTATCTGAAATCGAATCGTCTAAGGTACGGAAATTGGACACAATGTATAATGCTGCAGCTTTTCCATTGAATTTGTGCAATAAAAAGGATGGCTGCTGTGATGACCAGCACACACCATGCTTTCAAAAGAAGATTTCATGCTATTTCAATGACAACGTTGATTTCAAACTTCCTGATAACATTAGTCAAAGCAGGTCGGTCTTCCTCCGGAGCAACTCACAAGCCAAATTCACCCCCCGAGCAATTGCGAGGATAATGCATGGCATCGGAAGCCCAGCCTACCCTTCTTCAACCTGGTCTAGGACTCATTTCTGGTACAAGGAAAGACGGTGGGATCTGAAACAGCTTGTTGGATCTGGTGGGATGCCATCATCTCATTCTTCCACTGTTACTGCTCTTGCGGTAGCCATTGGGTTTCAAGATGGCTTTGGAGGACCAATTTTTGCTATTGCCTTGATACTAGCTTGTGTCGTAATGTATGATGCCACTGGCGTAAGATTACATGCCGGACGCCAAGCAGAGGTTTTGAATCAGATTGTATATGAACTTCCAGCGGAGCACCCTCTTGCTGAGAGCAGACCTTTGCGTGAACTTCTTGGCCACACCCCTCCCCAGGTTATAGCTGGAGGATGCCTTGGAATTGTCACTGCTACTCTTGGCTATCTGATTATCTTGATTAGTAGACAAAGACTGTGA 3207 42.13 MDLRSSIYFPIFGNSMESDSDSDGSHVSATPPRESKPPSPPPAPAPSFSNKGGIGTIASSISSRSKLIPKPPRSSSKCRPQKLPQKNDCVYDQHDSLLDAFPLPSFPFHIRHPSEMNRSASSIQSIENLPAGFFSKSASFSKIRRSVINFNIVDEDVPQSLSSNSQTKGDNDVTGCLPADSIPPEVKSESKSCENSKKEFRKHHNLIGGSVAMPPVKLRKCSGEGNFVKLNLNGKKRKFSGKGKKKGNYVLSGRRYYRRGKKKFKAGEGPESESIFDEEGLIMDTKQQKQSQESERSKFDVEMAAADAILMVRNEPSDDNLRKLLKLTHGYDSFRDGQLEAIKLVLDGKSTMLVLPTGSGKSLCYQIPAMILPGITLVVSPLVALMIDQLKQLPHGIQGGLLCSTQKPEEVSETLRLLRQGTMKVLFVSPERFLNADFLSMFSTSLPISLVVVDEAHCISEWSHNFRPAYMRIRASFLRDQLKINCVLAMTATATTSTLHAVISALEIPPENLILKSTLPKNLQLSLSTTKNRSKDLLALIKSPPFSEVRSIIIYCKFQSDTDIMSKCLCDNNISSKSYHSGLPANDRHRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHLSLPESLEEYVQEQTFLKEIGRAGRDGSLSFCHLFLDDHIYFKLRSLMHSDGVDEYVVNKFLSQIFIDDMNSCGKMCYLVKESASLKFDMKAEVIFTLLTHLELGEVQYLRLLPQSNVSCSLSFHKTSPVLLAENDVIVAELLKQPEIKQGQYKFNIPAVVNGTGVTATDLTNHLQNLKLKGEITYELTDMAFCYTMLEIPSDFCSLSAHLTRWLSEIESSKVRKLDTMYNAAAFPLNLCNKKDGCCDDQHTPCFQKKISCYFNDNVDFKLPDNISQSRSVFLRSNSQAKFTPRAIARIMHGIGSPAYPSSTWSRTHFWYKERRWDLKQLVGSGGMPSSHSSTVTALAVAIGFQDGFGGPIFAIALILACVVMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAESRPLRELLGHTPPQVIAGGCLGIVTATLGYLIILISRQRL 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31485719 31496287 + BLOR17406 Blo06g00823 62116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00823 1068 SMART ultradead3 330 526 IPR014001 -
Blo06g00823 1068 SMART helicmild6 563 650 IPR001650 -
Blo06g00823 1068 MobiDBLite consensus disorder prediction 12 87 - -
Blo06g00823 1068 MobiDBLite consensus disorder prediction 33 47 - -
Blo06g00823 1068 PANTHER ATP-DEPENDENT DNA HELICASE Q4 85 890 - -
Blo06g00823 1068 CDD DEXHc_RecQ4-like 323 514 - -
Blo06g00823 1068 PANTHER DNA HELICASE RECQ FAMILY MEMBER 85 890 - -
Blo06g00823 1068 Gene3D - 521 706 IPR027417 -
Blo06g00823 1068 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 342 512 IPR014001 -
Blo06g00823 1068 Pfam DEAD/DEAH box helicase 336 498 IPR011545 GO:0003676|GO:0005524
Blo06g00823 1068 Pfam Helicase conserved C-terminal domain 549 649 IPR001650 -
Blo06g00823 1068 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 324 685 IPR004589 GO:0004386|GO:0006310
Blo06g00823 1068 Pfam Divergent PAP2 family 942 1052 IPR003832 -
Blo06g00823 1068 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 449 458 IPR002464 -
Blo06g00823 1068 MobiDBLite consensus disorder prediction 12 29 - -
Blo06g00823 1068 MobiDBLite consensus disorder prediction 52 70 - -
Blo06g00823 1068 Gene3D - 307 512 IPR027417 -
Blo06g00823 1068 MobiDBLite consensus disorder prediction 159 191 - -
Blo06g00823 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 662 IPR027417 -
Blo06g00823 1068 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 710 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00823 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4] - zju:107428323 1042.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00326 Blo-Chr2:3312013 Blo06g00823 Blo-Chr6:31485719 3.90E-29 dispersed
Blo03g00547 Blo-Chr3:21447841 Blo06g00823 Blo-Chr6:31485719 8.79E-48 dispersed
Blo03g01456 Blo-Chr3:41177742 Blo06g00823 Blo-Chr6:31485719 7.69E-50 dispersed
Blo06g00823 Blo-Chr6:31485719 Blo10g00383 Blo-Chr10:6361243 1.26E-45 dispersed
Blo19g00182 Blo-Chr19:7889119 Blo06g00823 Blo-Chr6:31485719 7.77E-18 dispersed
Blo06g00823 Blo-Chr6:31485719 Blo15g00481 Blo-Chr15:7876115 6.16E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1156 . . . . . . . . . . . . . . . Cpe09g00572 . . . . . . . . . . . . . . . . . . . . . . . Blo06g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011110 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00823 Blo_Chr06 FPKM 2.120086 2.393631 61.498802 65.760101 11.267551 10.907055 12.569319 19.64002 22.463686 19.945539