Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00828 ATGAAGCTGACTCCGAGAGAGGTGGAGAAACTAGGTCTCCATAATGCAGGATATCTTGCGCAGAAACGTCTTGCTCGAGGACTGAGGCTAAATTATACTGAAGCTGTGGCTCTCATTGCCTCACAGATTTTGGAGTTTGTTCGCGATGGTGATAGAAGTGTAGCAGAATTGATGGACATAGGAAAGCAACTTTTAGGAAGGAGGCTTGTTCTTTCAGCTGTTCCACATCTTATGGACACTGTGCAGGTAGAAGGAACCTTTCCTGATGGAACTAAGTTAATCACCATTCATGATCCAATTGCTAGCGAAAATGGGAATCTGGAGCTAGCCTTACATGGATCTTTTCTCCCAATTCCTTCACTAGATGCATTTCCTGGCATCGAAAGCAATACATTTCCTGGTGAAATTGTCATTGGAGGTGGAAGTATTGCCATTAATCCTGGAAGGAAAGCTGTAATCCTCAAAGTTGTCAATAATGGAGACCGGCCCATTCAGGTTGGCAGCCATTATCATTTTATTGAGGTTAATCCTTTCTTGGTTTTTGATCGGTGGAAATCACATGGCATGCGCTTGAACATACCGGCTGGGACTGCCACACGTTTTGAGCCTGGGGAAGCTAAAAGTGTAGTTCTCGTCTCTATCAGTGGTAACAAAGTTATCAGAGGGGGAAATAGCTTTGCTGATGGTCCAGTTGATGACACTAAATTTGAAGCTTTCATGTCAGCTGTAAGCACGAAAAAGATTGGAAATATTGAAGAAAATAATGCCAGAGAAGGTGTTACTGGCGAAGATCCTGCATTCACCAGTGTCATTTCACGTGAGGCATATGCAAATATGTATGGTCCTACTATTGGTGACAAAATTCGATTAGGTGATACGGACTTATATGCTGAAATTGAACATGACTTTGCTGTTTATGGTGATGAATGTGTATTTGGAGGTGGAAAGGTTATACGAGAGGGAATGGGTCAATCATGTGGACATCTACCCGCTGACTCTCTGGATACTGTAATAACAAATGCTGTGATCATTGATTATAGTGGAATTATCAAGGCAGATATTGGTATCAAAGATGGTATTGTAGTTTCACTGGGAAAAGCTGGCAATCCAGATGTCATGCATGGTGTTCATACTAAAATGATCATTGGGGCTAACACTGAGGTTATTGCTGGAGAAGGATTAATCATTACAGCAGGAGCAATAGATTGTCATGTGCACTTTATATGCCCTCAGCTAGCATATGAGGCAATCACCAGTGGCATTACTACTTTAGTGGGAGGTGGAACTGGACCAGCTAGTGGAACTCGTGCGACTACTTGCACGCCATCCACTTTACAGATGATGTTAATGCTCCAATCAACAGATGATCTGCCTTTAAATTTTGGTTTTACAGGCAAAGGAAATAGTTCTCATCCTGATGAGCTATGTGAAATAATAAAGGCGGGAGCAATGGGCTTGAAATTGCACGAGGATTGGGGAAGTACTCCAGCTGCAATAGACAATTGTTTAGCTGTTAATATACATACTGACACCTTAAATGAATCTGGCTTTGTGGAACATACAATCGCTGCATTTAAAGGAAGAACAATACATACATACCACAGTGAAGGTGCTGGCGGTGGTCATGCCCCAGATATTATTTGCGTTTGTGGTGTGAAAAATGTTCTGCCGTCTTCAACAAATCCCACACGGCCCTTCACATCCAATACTATAGATGAGCATCTTGACATGCTGATGGTTTGTCATCACCTTGATAAGGATATACCAGAAGATGTTGCTTTCGCTGAATCAAGGATACGAGAGGATACAATTGCTGCCGAAGACATTTTGCATGACACAGGAGCAATTAGTATTATTTCTTCTGATTCACAGGCCATGGGTCGCATAGGAGAGGTTATAAGCAGAACTTGGCAAACAGCACACAAGATGAAAATACAAAGAGGACCTCTTGATTCCGATGGGCCAAACAATGACAACCTCAGGATCAAACGATATATTTCCAAATACACAATAAATCCAGCAATAGTAAATGGCTGCTCCCAGTTTATCGGATCAGTGGAGGTGGGAAAGTTGGCGGATCTTGTTCTGTGGAAGCCATCTTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGTGCTATTGCCTACGCAAATATGGGAGATCCAAATGCTAGTATTCCAACACCTGAACCGGTACTCATGAGACCAATGTTTGGAGCCTTTGGCAAGGCTGGAAGTGCTCATTCTATTGCATTTGCAGCTTTAGATAAAGGGGTTAAAGCCTCGTATGGGCTCAGCAAGAGAGTTGAAGCAGTGAGCAATGTTAGGAAACTCACAAAACTTGACATGAAATTTAATGACGCTCTTCCACACATCACAGTTGATCCAGAGACCTACACAGTAACAGCAGACGGAGAGATCCTCACCTGTGCTGCCGCAGCCACGGTTCCTCTTTCTAGGAATTACTTCCTATTTTAA 2481 42.64 MKLTPREVEKLGLHNAGYLAQKRLARGLRLNYTEAVALIASQILEFVRDGDRSVAELMDIGKQLLGRRLVLSAVPHLMDTVQVEGTFPDGTKLITIHDPIASENGNLELALHGSFLPIPSLDAFPGIESNTFPGEIVIGGGSIAINPGRKAVILKVVNNGDRPIQVGSHYHFIEVNPFLVFDRWKSHGMRLNIPAGTATRFEPGEAKSVVLVSISGNKVIRGGNSFADGPVDDTKFEAFMSAVSTKKIGNIEENNAREGVTGEDPAFTSVISREAYANMYGPTIGDKIRLGDTDLYAEIEHDFAVYGDECVFGGGKVIREGMGQSCGHLPADSLDTVITNAVIIDYSGIIKADIGIKDGIVVSLGKAGNPDVMHGVHTKMIIGANTEVIAGEGLIITAGAIDCHVHFICPQLAYEAITSGITTLVGGGTGPASGTRATTCTPSTLQMMLMLQSTDDLPLNFGFTGKGNSSHPDELCEIIKAGAMGLKLHEDWGSTPAAIDNCLAVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIICVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKDIPEDVAFAESRIREDTIAAEDILHDTGAISIISSDSQAMGRIGEVISRTWQTAHKMKIQRGPLDSDGPNNDNLRIKRYISKYTINPAIVNGCSQFIGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAYANMGDPNASIPTPEPVLMRPMFGAFGKAGSAHSIAFAALDKGVKASYGLSKRVEAVSNVRKLTKLDMKFNDALPHITVDPETYTVTADGEILTCAAAATVPLSRNYFLF 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31522169 31530025 - BLOR17411 Blo06g00828 62121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00828 826 PANTHER UREASE 1 826 - -
Blo06g00828 826 PRINTS Urea amidohydrolase (urease) protein signature 596 612 IPR005848 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 PRINTS Urea amidohydrolase (urease) protein signature 557 574 IPR005848 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 PRINTS Urea amidohydrolase (urease) protein signature 663 678 IPR005848 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 PRINTS Urea amidohydrolase (urease) protein signature 689 702 IPR005848 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 Hamap Urease subunit beta [ureB]. 131 231 IPR002019 GO:0035550|GO:0043419
Blo06g00828 826 CDD Urease_alpha 271 825 IPR005848 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 PIRSF Urease 1 826 IPR008221 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Blo06g00828 826 Pfam Amidohydrolase family 395 713 IPR006680 GO:0016787
Blo06g00828 826 Gene3D - 399 807 - -
Blo06g00828 826 Pfam Urease alpha-subunit, N-terminal domain 271 389 IPR011612 -
Blo06g00828 826 ProSitePatterns Urease nickel ligands signature. 397 410 IPR029754 GO:0016151
Blo06g00828 826 CDD Urease_gamma 4 100 IPR002026 GO:0016151|GO:0043419
Blo06g00828 826 Gene3D Urease, subunit C, domain 1 269 742 IPR011059 GO:0016810
Blo06g00828 826 ProSiteProfiles Urease domain profile. 399 826 IPR017951 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 TIGRFAM urease_gam: urease, gamma subunit 1 102 IPR002026 GO:0016151|GO:0043419
Blo06g00828 826 Gene3D Urease, beta subunit 149 268 IPR036461 -
Blo06g00828 826 SUPERFAMILY Urease, gamma-subunit 1 104 IPR036463 GO:0016151|GO:0043419
Blo06g00828 826 SUPERFAMILY Composite domain of metallo-dependent hydrolases 270 447 IPR011059 GO:0016810
Blo06g00828 826 SUPERFAMILY Metallo-dependent hydrolases 400 826 IPR032466 -
Blo06g00828 826 Pfam Urease subunit beta-alpha linker domain 231 264 IPR040881 -
Blo06g00828 826 Pfam Urease beta subunit 133 229 IPR002019 GO:0035550|GO:0043419
Blo06g00828 826 TIGRFAM urease_alph: urease, alpha subunit 271 826 IPR005848 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 Hamap Urease subunit alpha [ureC]. 269 826 IPR005848 GO:0006807|GO:0009039|GO:0016151
Blo06g00828 826 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Blo06g00828 826 TIGRFAM urease_beta: urease, beta subunit 132 232 IPR002019 GO:0035550|GO:0043419
Blo06g00828 826 SUPERFAMILY Urease, beta-subunit 132 260 IPR036461 -
Blo06g00828 826 CDD Urease_beta 133 231 IPR002019 GO:0035550|GO:0043419
Blo06g00828 826 ProSitePatterns Urease active site. 579 595 IPR017950 GO:0009039
Blo06g00828 826 SUPERFAMILY Composite domain of metallo-dependent hydrolases 671 741 IPR011059 GO:0016810
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00828 K01427 URE; urease [EC:3.5.1.5] - qsu:112022271 1417.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00828 Blo_Chr06 FPKM 6.659528 5.908721 9.382446 11.92516 9.213793 9.387869 11.193756 18.881872 19.823988 19.898466