Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00829 ATGTGCCAGACGCTTTCTGCAATATATGGCAAAGTAATGTCAATTTTTCCTTCCTTGGAAGCAGCACGGCCAAGAAGTAAATCTGGGATTCATGCATTATGTTCCTTGCATGTAGCCTTAGAAAAGACACAAAATATTCTTCAACGCTGCTCGGAGTCCAGTAAACTTTACTTGGCCATAACTGGTGATTCTGTACTCTCAAAATTTGAGAAGGCAAGATGCGCGCTTGAAGATAGTCTGAGATGCGTTGAAGATATTGTGCCACAATCAATTGGCTATCTGATTCAAGGGATAGTCAGTGAACTTGAGGGTACTGTGTTTTCTCTTGATCCTTTGGAGAAACAAATTGGTAACGATATTATCCCACTGCTCCAGCGGGGGAGAATATTCAGTAATTCCGAAAACAATAATGAACTAGAGTTATTTCACCAAGCTGCCATTAAACTTGGAATAACCTCCTCTAGAGCAGCCCTTGCAGAGAGAAGAGCTCTTAAGAAACTTCTAGACAGGGCTCACGCAGAAGAAGATAAGCGGAAGGAATCTATTGTGGCTTATCTATTACATCTCATGAGGAAATACTCCAAATCTTTTAGATGTGAATTTTCAGATGACAATGATTCCCAGGGCTCTGCACCTTGTTCTCCCACTGTTCAAAGTTTGCTTGATGACATTGATTCTGGACGTGATGGAAATAGAAATTACTTTGAAAGGCAGATTTCAAAATGTTGTTCTTCTAATTTGAAGTCAAGCAATAAGGAATCAGAGCAGATGCTTGTTCCACCTGAGGAATTGAGGTGCCCAATATCTTTGCAGCTTATGTTTGATCCTGTTATCGTTGCATCTGGTCAAACATATGAAAGGGTCTGCATTGAAAAATGGTTTAATGATGGACATAATAGCTGCCCAAAAACGCAACAGAAGCTCTCTCATCTTGCATTGACCCCCAATTACTGTGTCAAGGGTGTTATTGCTACTTGGTGCGAAGAGAATGGACTCTCTACTCCTGATGGCCCTCCAGAGTCTATTGACCTAAACTATTGGAGACTCGTGCCTGCATCCGAGTCTTCAAATGCAAGTTTTGCGGATTATTCCGATGCAAAAAAAGCGAAGGTAGTTCCATTGGAAGGCTGTGGCATTGTGGGGGAGGCTGACAGAAACGAGGCAGATAATATGTCTGTGCAGGAGGAAACTTTTGAACCTAACGTGTTTGATAGCTATGGGAATTTGTTGGCAGCCTTGAGTGGAGAAGACTGGATGAAAAAGTGTAAGGCTGGGGAGCAGATAAGGATCTTGCTGAAGGATGATGTAGATGCTAGGGACTTTATGGGAGCTAGTGGCTTTGTGGAGGCACTTCTGAGATTTTTAAACTTAGCTTTGCATGAAAGGAATCTAAGAGCTCAGGAAAGTGGATCGATGGCTCTCTTCAACCTTGCCGTGAACAATAATAGAAACAAGGAGATGATGTTGGAGGCGGGAGTGATTATGTTGTTGGAGAAAATGATATTGAATTCAAACTCACATGGATATGCGGCAGCCCTTTATCTAAATCTCTCCTGTCTTGAAGATGCAAAGTCTATCATTGGCGCAAGTAGAGCCGTCCCATTCATGACTCATCTACTCACAGGAACAGCTTCGCCTCAATGGAAGTTCGATACATTACATGCACTTCATAATCTCTCCACATTGCCGTCCAATATTCCATTCCTTCTTTCCGCAGGCATTGTGAGTAGCCTTCAAGTCCTTTTGGCAGGTTCTGATGACCACATTTGGAACGAAAAATCTACTGCCATCTTGATAAACTTAGCTTCAGATCAATCAGGGAGAGATGAGATGATATCATTTCCTGGGCTCATTAGTTCACTTGCAACTATATTGGACACTGGTGAACCTGTAGACCAAGAGCAAGTTATTGAATGCCTCCTCCTTTTGTGCAATGCAGATGAAAAATGCAGTGAAACAGTGTTACGGGAAGGAGTCATTCCGGGATTGGTATCAATCTCCGTGAATGGGACGATGAGCGGTAGAGAAAATGCGCAGAAACTTTTACTTTTGTTTCGGGAGCGGAGGCAACAAGACCAACCACCCATCTATAATATGAATCAGGAAGAAGAAAGCAGTGGGAAGGCCATGCCTGCTCCAGAATCTAATCCATCATGCAAACCAATTTCAATAAGAAAATCAGGAAAAGCACTTGGATTTCTATGGAAGAGAAGGAGCTATTCAGTCTACCAATGTTGA 2238 42.4 MCQTLSAIYGKVMSIFPSLEAARPRSKSGIHALCSLHVALEKTQNILQRCSESSKLYLAITGDSVLSKFEKARCALEDSLRCVEDIVPQSIGYLIQGIVSELEGTVFSLDPLEKQIGNDIIPLLQRGRIFSNSENNNELELFHQAAIKLGITSSRAALAERRALKKLLDRAHAEEDKRKESIVAYLLHLMRKYSKSFRCEFSDDNDSQGSAPCSPTVQSLLDDIDSGRDGNRNYFERQISKCCSSNLKSSNKESEQMLVPPEELRCPISLQLMFDPVIVASGQTYERVCIEKWFNDGHNSCPKTQQKLSHLALTPNYCVKGVIATWCEENGLSTPDGPPESIDLNYWRLVPASESSNASFADYSDAKKAKVVPLEGCGIVGEADRNEADNMSVQEETFEPNVFDSYGNLLAALSGEDWMKKCKAGEQIRILLKDDVDARDFMGASGFVEALLRFLNLALHERNLRAQESGSMALFNLAVNNNRNKEMMLEAGVIMLLEKMILNSNSHGYAAALYLNLSCLEDAKSIIGASRAVPFMTHLLTGTASPQWKFDTLHALHNLSTLPSNIPFLLSAGIVSSLQVLLAGSDDHIWNEKSTAILINLASDQSGRDEMISFPGLISSLATILDTGEPVDQEQVIECLLLLCNADEKCSETVLREGVIPGLVSISVNGTMSGRENAQKLLLLFRERRQQDQPPIYNMNQEEESSGKAMPAPESNPSCKPISIRKSGKALGFLWKRRSYSVYQC 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31531339 31534327 - BLOR17412 Blo06g00829 62122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00829 745 Gene3D - 610 683 IPR011989 -
Blo06g00829 745 SUPERFAMILY RING/U-box 249 335 - -
Blo06g00829 745 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 698 - -
Blo06g00829 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 446 492 IPR000225 GO:0005515
Blo06g00829 745 MobiDBLite consensus disorder prediction 693 721 - -
Blo06g00829 745 CDD RING-Ubox_PUB 264 306 IPR045210 -
Blo06g00829 745 SUPERFAMILY ARM repeat 408 685 IPR016024 -
Blo06g00829 745 Pfam U-box domain 261 330 IPR003613 GO:0004842|GO:0016567
Blo06g00829 745 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Blo06g00829 745 SMART arm_5 481 519 IPR000225 GO:0005515
Blo06g00829 745 SMART arm_5 435 479 IPR000225 GO:0005515
Blo06g00829 745 SMART arm_5 520 561 IPR000225 GO:0005515
Blo06g00829 745 Gene3D - 404 609 IPR011989 -
Blo06g00829 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 334 IPR013083 -
Blo06g00829 745 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Blo06g00829 745 PANTHER U BOX DOMAIN-CONTAINING 1 698 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo06g00829 Blo16g01194 CCT
Blo01g00365 Blo06g00829 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01566 Blo-Chr1:55421353 Blo06g00829 Blo-Chr6:31531339 3.79E-50 dispersed
Blo04g00915 Blo-Chr4:10711448 Blo06g00829 Blo-Chr6:31531339 1.17E-73 dispersed
Blo06g00829 Blo-Chr6:31531339 Blo16g01194 Blo-Chr16:40439448 0 dispersed
Blo01g00365 Blo-Chr1:4283069 Blo06g00829 Blo-Chr6:31531339 0 wgd
Blo16g01191 Blo-Chr16:40421873 Blo06g00829 Blo-Chr6:31531339 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00829 - - jre:109019801 960.674