Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00835 ATGAATACGTCGATTTATGCGACTTTTGGTGAGAAAATGGGTGGAGAAATCGCGGAGGTTGAGCTACTGAGTCGTTCGTCGAGGCCTTGCTTTTACTTAGGAGCCAACTATACTAAGATGGGGTTCGCCGGAAACGTAGAGCCGTGTTTTATTCTGCCGACTGTAGTGGCTGTAAACGAGTCGTTCTTAAATCAATCGAGAAGCTCTTCCAAGGCAACTTGGCTGACGCAGTATAATGCTGGTGTGATGGCAGATCTTGACTTTTTCATTGGAGACGAAGCACTTGCAAAATCAAGATCTAGCACTACTTATAATCTTAGCTATCCGATTCGAAATGGTCAGGTTGATAATTGGGACGCCATGGAGAGGTTCTGGCAGCAGAGTATATTTAACTATTTAAGGTGTGATCCGGAGGATCATTATTTTCTATTGACTGAAAGCCCTCTTACTGCACCAGAGAGTCGTGAATACACGGCTGAGATTATGTTTGAGACGTTCAATGTTCCAGGGCTTTATATTGCCGTGAATTCAGTGCTTGCTCTTGCTGCTGGGTACACAACATCTAAGTGTTTAGTCATGTGTTGGGTGATGGCGAATTGGGTGAGAACTCTTTTGTTGGGTTGGGAAGGTGTTGTAGTGGATATTGGAGATGGAGCTACTCATATTGTACCTGTTGCAGATGGTTATGTGATTGGAAGCAGCATTAAATCTATTCCGATTACTGGCAAGGATGTAACACTCTTTGTCCAGCAACTAATGCGGGAAAGAGGAGAGAATGTACCTCCAGAGGACTCCTTTGAAGTGGCTCGAAAAGTCAAGGAAACGTATTGTTACACCTGCTCTGATATTGTGAAGGAGTACAATAAACATGACAAAGAACCAACAAAGTACATCAAACAATGGAAGGGTATTAAACCAAAGACAGGGGCACCATACTCTTGTGACATAGGCTATGAGCGGTTTCTGGGCCCTGAGGTATTTTTTAATCCTGAAATTTATAGCAGTGAGCTTTCCACCCCCTTACCAGCTATTATAGACAAATGTATCCAGTCTGCTCCAATCGATACTAGAAGAGCTTTGTATAAGAAATTAGTTCTTTCCTTTTTTATTAGTGTTACAAAGTGGTATATGTCCTTCGTAGAGAAACTCATCTCCGTTATTCCTCAGAACATCGTATTATCTGGAGGTTCAACCATGTTCAAGGACTTTGGCCGCAGGTTGCAACGTGATCTAAGGAAGATTGTGGATGCCCGGGTTCTGGCAGCTGAAGCTAAACTTCATGGGGAAATAAAACCAGTGGAAGTTAATGTTGTAAGCCATCCCATCCAAAGCTTTGCAGTTTGGTTTGGAGGTTCAGTGCTTGCATCAACTCCAGAATTTTTCGCTGCATGCCATACAAAAGAGGAGTATGATGAACATGGTGCTAGTATTTGTCGCACCAATCCAGTTTTCAAGGGGATGTACTAA 1467 42.88 MNTSIYATFGEKMGGEIAEVELLSRSSRPCFYLGANYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKATWLTQYNAGVMADLDFFIGDEALAKSRSSTTYNLSYPIRNGQVDNWDAMERFWQQSIFNYLRCDPEDHYFLLTESPLTAPESREYTAEIMFETFNVPGLYIAVNSVLALAAGYTTSKCLVMCWVMANWVRTLLLGWEGVVVDIGDGATHIVPVADGYVIGSSIKSIPITGKDVTLFVQQLMRERGENVPPEDSFEVARKVKETYCYTCSDIVKEYNKHDKEPTKYIKQWKGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSELSTPLPAIIDKCIQSAPIDTRRALYKKLVLSFFISVTKWYMSFVEKLISVIPQNIVLSGGSTMFKDFGRRLQRDLRKIVDARVLAAEAKLHGEIKPVEVNVVSHPIQSFAVWFGGSVLASTPEFFAACHTKEEYDEHGASICRTNPVFKGMY 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31581290 31585901 - BLOR17418 Blo06g00835 62128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00835 488 Pfam Actin 386 479 IPR004000 -
Blo06g00835 488 Pfam Actin 34 367 IPR004000 -
Blo06g00835 488 Gene3D - 31 201 - -
Blo06g00835 488 Gene3D Actin; Chain A, domain 4 242 334 - -
Blo06g00835 488 SMART actin_3 30 483 IPR004000 -
Blo06g00835 488 PANTHER ACTIN 34 368 IPR004000 -
Blo06g00835 488 PANTHER ACTIN 389 480 IPR004000 -
Blo06g00835 488 CDD NBD_sugar-kinase_HSP70_actin 107 240 - -
Blo06g00835 488 Gene3D - 432 486 - -
Blo06g00835 488 Gene3D - 210 367 - -
Blo06g00835 488 Gene3D - 369 422 - -
Blo06g00835 488 SUPERFAMILY Actin-like ATPase domain 210 483 IPR043129 -
Blo06g00835 488 PANTHER ACTIN-RELATED PROTEIN 3-LIKE 34 368 - -
Blo06g00835 488 PANTHER ACTIN-RELATED PROTEIN 3-LIKE 389 480 - -
Blo06g00835 488 SUPERFAMILY Actin-like ATPase domain 33 186 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00835 K18584 ACTR3, ARP3; actin-related protein 3 - mnt:21410251 753.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00835 Blo-Chr6:31581290 Blo04g00958 Blo-Chr4:11695906 2.12E-59 dispersed
Blo06g00835 Blo-Chr6:31581290 Blo05g00554 Blo-Chr5:11889754 1.32E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g594 . . . . . . . Bma15g00231 . Cmo18g00718 . Cma18g00730 . Car18g00679 Sed06g1711 Cpe09g00558 Cpe01g01581 Bhi07g01840 Tan04g0128 Cmetu10g1498 Lac13g0112 Hepe10g1562 . . Cla05g02622 Cam05g2810 Cec05g2846 Cco05g2877 Clacu05g2814 Cmu05g2662 Cre05g2778 . . . . Lsi04g00634 Csa05g02253 Chy10g00822 Cme10g00608 Blo06g00835 . . . . . . . . . . Cma04g01794 . Car04g01808 . . . . . . . . . . . . . . . . . . . Chy09g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007687 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00835 Blo_Chr06 FPKM 30.688511 33.907673 24.017216 25.025661 19.331526 19.605709 18.503906 10.631613 10.148221 9.74622