Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00838 ATGGAAGAAACTGGTCTTGTTCGTTTTCCGGGAAGTTTGGATCCGAGAGCTCAGGAGTTCCGACCAAGAAACCCTACCGACCTCAACCCGCCTCCGTCTCACCATTTTTATTATTCCTTAGCTTCTCCATATCCTCCGATCAGCGAAGTCCACGTGCTGCCCTTCTACGACTGCGCCGTAGGCTACCCTCAATTTCATTTACCTCCGCCGTACGTTACCCAAGGCTCCGGTCCTCCTCCGCTTCGTCCGTGGGCTCAGCTTCCTTCGACCGCGACCCGGTCGCTTCTGCTCACATCTGTTCCGAGTGAAGTCAGCGAATCTGCGGTACGGAGGGAATTGGAATCGTTCGGGGAAGTTCGAGCGGTGGAGATGGGGAGAGTGAGCGAGGGCTTTTTGACTGTTCATTTTTACGATCTGAGAAATGCGGAAATGGCTTTCAGGGAGATTAGAGAGCAGCACATGCAGCAGCAAATCCGCCTCCGCCATTATTACACCTCGTTACCTCTACGAAATTCTCCTCCACCGCTTCCTCCGCCCGCGCGTGGGCTCATCTATGGCCGTGCGGTCTGGGCGCAGTTCGTTATTCCGGAGAGTTACGCCGTACCGGAGGGAAGAAATCAAGGTACCATCGTCGTATTTAATCTAGCCTCCGACGTCTCCACATCCGTTCTCAGAGAAATCTTCGAAGCTTTCGGCCCTGTGAAGGAATTGAGAGAGACGCCATTGAAGAAGAGCCAAAGATTTGTGGAGTTTTTCGATATTAGAGACGCTGCAAAGGCCCTTAATGAGATGAACGGTAAAGAAGTCGCCGGGAAGCCACTCCTCATTGAATTCAGTAGACCTGGTGGCCATAGCCGGAAGCTGTTCAATGTCATCTCCTCTAATCCAACAATCTACAGAAACTCAAATTCTCACTTCCGCAAAACTCCGAAATTCTCCCTTCCAACTCCTATGCATTACACTGAAAAAAGATTGAGCCACCACAGCAAGAGTAGCTCCAATGAAGCTCTAATGGCGTCACTGAATTTGAACGGCGACTCTGGTACTAGAATTGAAGAGGAGCCAGAATTACCTGGGCAGCCATTGAAGGAGAACTCGAAGAAGAAACTCATCGATTCCGCCATGACAGTAGTAAACAAGCCATCGCATCCTCATCCAGGCAGAAGCAAAATGCGAAAAGGAAGACAACCTAAGAAATTCGATTCTAGATTTCTGATAAACGAAGATCAAATTGTTGAATCTGAATGTAGAGATTCAAGAACTACCGTTATGATAAAAAACATACCAAATAAGTACAGTCAAAAGTTGCTGCTTAATATGTTGGACAACCACTGTATTGACTGCAACGAGCAGATTGGAGAGGAAGAAGAACAGCCTTTGTCGGCGTATGATTTCGTCTACCTCCCAATTGATTTCAACAACAAATGCAACGTGGGTTATGGGTTTGTTAACATGACGTCGCCGGAAGCGACATGGCGGTTGTACAAAGCCTTCCATTTTCAGCGTTGGGAGGTCTTCAATTCAAGAAAAATCTGTCAAGTTACCTACGCAAGAGTGCAGGGATTGGAAGCTCTGAAAGATCACTTCAAGAACTCTAAGTTCCCTTGCGAAATGGACCATTATTTACCCGTGGTCTTTTCTCCGCCTCGTGATGGGAGGCAATTGACGGATCCTCTCCCCATTGCGGGCCAAAAGCAGCTCATCGCCGTTCGTGTTTCATCGGAAGAAGCTGCAAATGAAGATGAAGAAGAGATGAACGATCCAGATAGAGCGGAAAACGCCAATTACCATAATCCGGACTCACTGATTGGTTGCAGCTACAGCAGCTGTACCAGCCACATTTCCGGCGATGATGATTATGGAAATGATGAAGACTGCTAA 1881 48.06 MEETGLVRFPGSLDPRAQEFRPRNPTDLNPPPSHHFYYSLASPYPPISEVHVLPFYDCAVGYPQFHLPPPYVTQGSGPPPLRPWAQLPSTATRSLLLTSVPSEVSESAVRRELESFGEVRAVEMGRVSEGFLTVHFYDLRNAEMAFREIREQHMQQQIRLRHYYTSLPLRNSPPPLPPPARGLIYGRAVWAQFVIPESYAVPEGRNQGTIVVFNLASDVSTSVLREIFEAFGPVKELRETPLKKSQRFVEFFDIRDAAKALNEMNGKEVAGKPLLIEFSRPGGHSRKLFNVISSNPTIYRNSNSHFRKTPKFSLPTPMHYTEKRLSHHSKSSSNEALMASLNLNGDSGTRIEEEPELPGQPLKENSKKKLIDSAMTVVNKPSHPHPGRSKMRKGRQPKKFDSRFLINEDQIVESECRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIDCNEQIGEEEEQPLSAYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHFQRWEVFNSRKICQVTYARVQGLEALKDHFKNSKFPCEMDHYLPVVFSPPRDGRQLTDPLPIAGQKQLIAVRVSSEEAANEDEEEMNDPDRAENANYHNPDSLIGCSYSSCTSHISGDDDYGNDEDC 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31622888 31625278 + BLOR17421 Blo06g00838 62131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00838 626 CDD RRM1_EAR1_like 92 160 - -
Blo06g00838 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 165 IPR000504 GO:0003723
Blo06g00838 626 SUPERFAMILY RNA-binding domain, RBD 208 499 IPR035979 GO:0003676
Blo06g00838 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 281 IPR000504 GO:0003723
Blo06g00838 626 Gene3D - 89 167 IPR012677 -
Blo06g00838 626 Gene3D - 202 288 IPR012677 -
Blo06g00838 626 Pfam RNA recognition motif 2 420 530 IPR007201 -
Blo06g00838 626 MobiDBLite consensus disorder prediction 573 597 - -
Blo06g00838 626 SUPERFAMILY RNA-binding domain, RBD 79 154 IPR035979 GO:0003676
Blo06g00838 626 PANTHER TERMINAL EAR1-LIKE 1 35 592 - -
Blo06g00838 626 MobiDBLite consensus disorder prediction 378 397 - -
Blo06g00838 626 MobiDBLite consensus disorder prediction 1 28 - -
Blo06g00838 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 274 IPR000504 GO:0003723
Blo06g00838 626 SMART rrm1_1 209 277 IPR000504 GO:0003723
Blo06g00838 626 SMART rrm1_1 94 161 IPR000504 GO:0003723
Blo06g00838 626 CDD RRM3_EAR1_like 420 521 IPR034458 -
Blo06g00838 626 PANTHER RNA BINDING PROTEIN 35 592 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00838 - - - jre:108990795 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00534 Blo-Chr4:4595995 Blo06g00838 Blo-Chr6:31622888 1.03E-42 dispersed
Blo06g00838 Blo-Chr6:31622888 Blo12g00293 Blo-Chr12:17299640 9.84E-17 dispersed
Blo06g00838 Blo-Chr6:31622888 Blo13g00305 Blo-Chr13:16432553 8.24E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00838 Blo_Chr06 FPKM 13.462358 14.375328 31.26413 33.063076 13.93671 13.283212 12.220186 11.84338 12.930617 12.866791