Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00839 ATGTGGGTCCAACAATGGCTTTCTTCAGCCGTCTCCACCACAACATCTGACGGCGAGTCTCCTCCGGCGCCGAAACGCCTAATCTCAGACATGAGCAGCGGCTCCGATACTCCGAGCGACACCAGCAGTAGTAGTCTGCAAAGCAGTCTGTCTCTCATAACTTTACCTTCGGTTCCTTCTCTACAGAAACTCACCCCCGAGACATTCAACCTCGAAGTCTCTTACGTCTGCACCTCTTCTTCAACGCCTCGAAAATCGATTCCGATCTCCTGCCTTGCGGTTCACGGGGATCTCCTCTATGCCGCATCTGAGCATGAAATCAACGTATACGATCTAGCCACGTTTGCGCATCTGGAAGCCATTAACGCGAGCAATTCCTCCTCTGGTTCGGTCAAGGCTCTAACTTTTTGGGACGGAAGGATCTTCACCGCCCATCAGGATGAGAAGATTAGAGTATGGGAGATAAAAGATACAAAGAGGCATAAATTGGTAAATACTCTCCCTACAATTAACGATAAGGTGTTGCGTTTTTTTCTGCCGAAGAATCATGTTACCGTCCGCCGTCACAAGCGACGGCTCTGGATCGAACATTCTGACGCCGTCACTGGGCTTGCGGTTTACGGCGGTTTGTTATATTCAGTTTCTTGGGATAGAAGTTTGAAGATATGGAGAGCTTCTGATCTCCGGTGTATCGAGTCGATCAGAGCTCACGAGGACGCCATCAATGCCGTCGTTGTCAGCGGCGACGGAACTGTTTACACAGGCTCCGCCGATCGGAAAATTAGAGTTTGGGGAAAACAAGGCGGGGAAAAGCAGCACTCGTTGATTGCGACATTGGAGAAGCACAAATCCGCCGTAAATGCATTAGCATTAAACAACGACGGAAGGCTGCTCTTCTCCGGTGCATGCGACCGTTCGATATTGGTGTGGGAGAAGGAAGATAGCGCGAATCACATGGCGGTAATTGGTGCTTTGAGAGGTCACGATAGAGCCATACTTTGCTTGATTTACGTCTCAGATTTGCTCTTCAGTGGGTCAGCCGATCGGACGGTCAGAATTTGGCAGCGTGGAATCGATGGGAATTACAGCTGTCAGGCCGTGTTGGATGGTCATCAGAAACCGGTGAAATCGCTGGTTGTTTCAGAAGCGGAAGGAAAAAACGGCGTCATTTCGTTAGTCAGTGGCTCTCTAGATGGCGAGATAAAGGCTTGGCAAATTACCCTGGTATTTAGCATATGGAAGATGGCAAGTATTGGCGACGAAGATACCGATGCAGTGCTTAGTGATGTGGAAGGCGATGATCCAGTGCCGATTGCGATAAAGAATATTTCCCCGGAAGAAATCTCCGTCGATAAGTTTAGGGAGCTTCTGGCTGAGCTCGATCAGGAGCGGCAGGCACGTGAGGCTGAGGAGAAATCCAAATTAGAATTGCAAGGTTCATTCAATCGCTTAAAAGTTCTTGCTCACGAGGCAATTAAGAAGCGTGATGACTACATTAGGCAAAGAGACGATGCCTTAAGGGAGAAGGAAGAGGCTTTGAAATCAAATGAGATCCTCTCAGATCAGTTGGCTGACGCAAATAGGTTGAATGACGAGGTTTCAAAGCTGAAGGATGAAATTACCTCACAATTGGATGAGGTTGTAAGGGAGAGGGATGGGTTGAAATCTGAAATAGGGAATGCATCGCATATGCTTGTGACCGGAATCGAAAAAATATCAGGCAAAGTTAAAAATTTTAAGAATTTCACTGCAGGTGGATTGCCAAGGTCCCAGAAGTATGTGGGGTTACCGGCCATTGTATATGGCGTTATTAAGAGGACAAATGAGATTGTTGAAGAGGTTGTTAGGCAGATTGATGCCACAGCAAAGTCTCGGAACGAAACTAGGGAACAGATGGAGTCCAGAAATTATGAGATTGCCATTGAGGTTTCACAACTTGAAGCGACAATTAGTGGTCTGAGAGAAGAGGTAACGAAGAAAACATCTTTGATTGAGAATTTAGAGAAAGTTATTGCAACAAAGGATGAAAAAATATCTGAAAATGAAAGAGAGATGTCGGCGAAATTAAATGTGTTGGAGAATGAAGCCTCTGAGTTGAAGCAGTTAGCCCATGACTATGATGTTGAGCTGAAAACTTTGGAGTCGAAAATGGAGTCTCAGAGACCTTTACTCAATGATCAATTGAGTTTTGTTTCTAAAATTCATGGAAGGATTTATAATGTTTTGAAGATTGTTGATGCTGGTAATGTCGATGATTCTGATTTTTCAGAGTCCTTTTTTCTCCCTCAAGAATCAGACACAGAGGAAAATATACGCGCATCATTAGCAGGAATGGAATCAGTTTATGAACTAACCAAAGTTGTTATTGAGAAGACAAGATATTTAATGGAGGAGAAAAGTCGGGAAATAAAGGATTTGGATGAAACAGTTGGTCGGTTGATTAAGGAGAAAGAGCATATTGGATCTTTACTCAGAAGTGCTTTGTCAACGAGGATGGCATCTGATCCATCTTCTAAGAGTAGCCATTTGTTTCATGTTGCAGAAAATGGTTTGAAAGAGGCCGGAATAGAATTTAAATTTAGCAAACTTCTCGGAAGTGAAAATGTTCCAAATTCTAGTAATAAAGAAAATTTACATGAGGCTGAAGATGAGATTTATACCCTGGCTGGTGCGTTGGAGAACATCGTGAAGGTCTCTCAGATTGAGATTATTGAACTGCGGCATTCTCTTGAAGAATTAAGGGCAGAGTTGAGTTTACTTAAAGAGCATCTAGAAGTTAAATCCAAGGAGCTTAACCATAGAATGCGTCAAATTGAGGAACTTGAGGAGAAGGAGAGAATAGCTAATGAAAGTATTGAAGGGCTAATGATGGACATAGCTGCTTCCGAAGAAGAAATTAGTAGATGGAAAGCAGCAGCAGAGCAAGAGGCTGCTGCAGGTAGAGCTGTTGAACAAGATTTTATGAAACAGCTCTCAGCACTTAAGCTGGAACTCGAAGAGGAGAAACAAGCCATGATGGAGTTGGAGAAAAAGCTCAAATTTAAAGAAGAGACTGCAGCAGCTGCCATGGCAGCAAGAGATGCTGCTGAGAAATCATTGAGATTGGCAGACATGAGAGCATCCAGGCTGCGGGATCGAGTAGAGGAACTGACACGTCAACTTGAAGAATATGAAAACAGGGAAGACACTGGAAGAGGCCGAAACGCTCCGAGATATGTATGCTGGCCCTGGCAGTGGCTTGGCTTGGACATTGTAGGATCTCAACGGTCGGAAATTAACCAATCAATTTCGAACGAGATGGAGCTTTCTGAACCTCTTCTTTGA 3324 44.52 MWVQQWLSSAVSTTTSDGESPPAPKRLISDMSSGSDTPSDTSSSSLQSSLSLITLPSVPSLQKLTPETFNLEVSYVCTSSSTPRKSIPISCLAVHGDLLYAASEHEINVYDLATFAHLEAINASNSSSGSVKALTFWDGRIFTAHQDEKIRVWEIKDTKRHKLVNTLPTINDKVLRFFLPKNHVTVRRHKRRLWIEHSDAVTGLAVYGGLLYSVSWDRSLKIWRASDLRCIESIRAHEDAINAVVVSGDGTVYTGSADRKIRVWGKQGGEKQHSLIATLEKHKSAVNALALNNDGRLLFSGACDRSILVWEKEDSANHMAVIGALRGHDRAILCLIYVSDLLFSGSADRTVRIWQRGIDGNYSCQAVLDGHQKPVKSLVVSEAEGKNGVISLVSGSLDGEIKAWQITLVFSIWKMASIGDEDTDAVLSDVEGDDPVPIAIKNISPEEISVDKFRELLAELDQERQAREAEEKSKLELQGSFNRLKVLAHEAIKKRDDYIRQRDDALREKEEALKSNEILSDQLADANRLNDEVSKLKDEITSQLDEVVRERDGLKSEIGNASHMLVTGIEKISGKVKNFKNFTAGGLPRSQKYVGLPAIVYGVIKRTNEIVEEVVRQIDATAKSRNETREQMESRNYEIAIEVSQLEATISGLREEVTKKTSLIENLEKVIATKDEKISENEREMSAKLNVLENEASELKQLAHDYDVELKTLESKMESQRPLLNDQLSFVSKIHGRIYNVLKIVDAGNVDDSDFSESFFLPQESDTEENIRASLAGMESVYELTKVVIEKTRYLMEEKSREIKDLDETVGRLIKEKEHIGSLLRSALSTRMASDPSSKSSHLFHVAENGLKEAGIEFKFSKLLGSENVPNSSNKENLHEAEDEIYTLAGALENIVKVSQIEIIELRHSLEELRAELSLLKEHLEVKSKELNHRMRQIEELEEKERIANESIEGLMMDIAASEEEISRWKAAAEQEAAAGRAVEQDFMKQLSALKLELEEEKQAMMELEKKLKFKEETAAAAMAARDAAEKSLRLADMRASRLRDRVEELTRQLEEYENREDTGRGRNAPRYVCWPWQWLGLDIVGSQRSEINQSISNEMELSEPLL 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31636837 31647419 + BLOR17422 Blo06g00839 62132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00839 1107 Coils Coil 1033 1067 - -
Blo06g00839 1107 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 311 - -
Blo06g00839 1107 SUPERFAMILY WD40 repeat-like 87 416 IPR036322 GO:0005515
Blo06g00839 1107 Coils Coil 984 1025 - -
Blo06g00839 1107 SMART WD40_4 187 224 IPR001680 GO:0005515
Blo06g00839 1107 SMART WD40_4 227 265 IPR001680 GO:0005515
Blo06g00839 1107 SMART WD40_4 68 111 IPR001680 GO:0005515
Blo06g00839 1107 SMART WD40_4 361 405 IPR001680 GO:0005515
Blo06g00839 1107 SMART WD40_4 117 154 IPR001680 GO:0005515
Blo06g00839 1107 SMART WD40_4 318 355 IPR001680 GO:0005515
Blo06g00839 1107 SMART WD40_4 272 311 IPR001680 GO:0005515
Blo06g00839 1107 CDD WD40 88 405 - -
Blo06g00839 1107 PANTHER OS08G0559800 PROTEIN 415 1107 IPR040300 -
Blo06g00839 1107 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 274 IPR001680 GO:0005515
Blo06g00839 1107 PANTHER PARAMYOSIN 415 1107 - -
Blo06g00839 1107 Coils Coil 450 473 - -
Blo06g00839 1107 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 311 IPR001680 GO:0005515
Blo06g00839 1107 Gene3D - 184 270 IPR015943 GO:0005515
Blo06g00839 1107 Gene3D - 271 433 IPR015943 GO:0005515
Blo06g00839 1107 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Blo06g00839 1107 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Blo06g00839 1107 PRINTS G protein beta WD-40 repeat signature 141 155 IPR020472 -
Blo06g00839 1107 MobiDBLite consensus disorder prediction 30 45 - -
Blo06g00839 1107 Gene3D - 67 183 IPR015943 GO:0005515
Blo06g00839 1107 MobiDBLite consensus disorder prediction 1 20 - -
Blo06g00839 1107 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 264 - -
Blo06g00839 1107 Coils Coil 650 716 - -
Blo06g00839 1107 Gene3D - 477 714 - -
Blo06g00839 1107 Pfam WD domain, G-beta repeat 229 264 IPR001680 GO:0005515
Blo06g00839 1107 Pfam WD domain, G-beta repeat 276 310 IPR001680 GO:0005515
Blo06g00839 1107 Pfam WD domain, G-beta repeat 323 354 IPR001680 GO:0005515
Blo06g00839 1107 MobiDBLite consensus disorder prediction 1 45 - -
Blo06g00839 1107 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 355 IPR001680 GO:0005515
Blo06g00839 1107 Coils Coil 896 958 - -
Blo06g00839 1107 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 355 - -
Blo06g00839 1107 Coils Coil 495 557 - -
Blo06g00839 1107 Coils Coil 789 816 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00839 - - - jre:108991577 949.503
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00839 Blo11g01035 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00839 Blo-Chr6:31636837 Blo11g01035 Blo-Chr11:27867057 0 dispersed
Blo06g01132 Blo-Chr6:34786067 Blo06g00839 Blo-Chr6:31636837 1.41E-23 dispersed
Blo06g00839 Blo-Chr6:31636837 Blo04g01023 Blo-Chr4:13666761 2.02E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009045 1 0 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00839 Blo_Chr06 FPKM 9.1292 10.803756 13.51633 13.928005 10.719891 11.69337 10.36359 23.705038 23.838987 21.732166