Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00863 ATGCTTTTATACAGCTCTGTCTCCGTCTCTCTTTGTAGCCGACTGTCATTTTCGTCCAAGTTTCTCTCCGATTTCAGGCATTCCTACTCTTTGCTGTCCCATTTTTCATCTTGTTCCGATCGATTTCGTTTGATATTTCTGAAACCACAATGTTCGAAGCAATTCAGGACGTTTGGAACTTCTTCGGCTGTCGCTGCTGATGGAAATGGCGATACGTTTTTTGCTGCGGAAAGTGTTTCATGGACATCGCTTGGTTTGTCTAGTAAGATTTCACGAGCTCTCGCTGATTCTGGCATCGAACGGCCTTCTCTGATTCAGGCTGCTTGCATTCCGTCTATAATATCAGGAAAGGATGTGGTTATTGCAGCAGAGACTGGTAGTGGTAAAACACACAGTTACCTTGCTCCCCTGATTAATCAACTATGCACTACGCCAGATTCCAAATCCACGGATTCTGTTGAAGGGGTGAATCCTTCTCATAGGTTTGTTCTTGTTCTCTGCCCAAATGTACTCTTATGCCAGCAAGTTGTTCAAATGGCCAATGGATTTTGTGATGGAAGCGGCGGACCACTGCTCAGAGTTGCGGCAGTCTGTGGAAAACAGGCATATAATATATTCTTCCTTGAGACTTTCAATGAACCTGATATTATTGTGTCAACACCAGCTGCTCTTCTTAATTATATTGAACCTAACAAAAATCACCGCTTACTTTTCTTGCGAGCTGTAAAATATGTGGTATTTGATGAAGCAGATATGCTTCTTGGTGGTGGATTTTTGAATAAAGTCATCCGCCTCATACACATGCTCCGATTTGATGAAAAGTTATTGTCTAGTTCAAAAAAAGATCCTGAGCGGTCATTGGATTCAGAATCGGATTCTTTATTACGTGTTACTTTAGAGGATGAAAATGAGTTGCAAACTAAAATATTTTTGGAAGCAGAAGAAAACTATAACGAGGTTATGGATGTTGACGACAACTCACCTGAGGAAGAGAATCCGGAAATTGGATCCATTGGAAGAAAAGACTGGAGGAGAGTGCGGAAAAGTTATGAACGCAGTAAACAGTACATTTTTGTTGCCGCAACCCTTCCTGTGAATGGGAAGAAAACTGCTGGGGCTGTTTTGAAGAAACTGTTTCCTGATGCTACCTGGATTAGCGGCAATTACCTCCACTGTCACAGTCCCAGATTAGAGCAGAGGTGGATAGAAGTTACAATTGATACCCAGGTTGAGGAACTTATTAAGGCTGTGAATCAAGGTTCTAAATCTCAACCATTACATTGTGGAAATATAGCATCTAGAACGATGATTTTCGGAAACACTGTTGAGGCTGTTGAAGCAGTTGCTAACATATTGGTGAAGTCGGGGATTGAATGTTTTCGCTATCATAAGGACTGTACTTTAGAAGAGCGTGCCAAAACCTTAGCTGAGTTCCGTGAGAAAGGGGGTGTTCTTGTATGCACAGATGCTGCTTCACGAGGTGTTGACATTCCGAATGTTGCTCATGTTATTCAGGCAGACTTTGCAACATCTGCTATAGATTTTTTGCATCGAATAGGACGAACTGGTAGAGCCAGTAATTTTGGACTTGTCACAAGCCTGTACACAGAATCCAACCGTGATCTCGTTTCTGCAGTCCGTCGAGCAGGAGATCTGTCTCAGCCTGTGGTACTTTTCAGTACTTTCTAA 1689 42.33 MLLYSSVSVSLCSRLSFSSKFLSDFRHSYSLLSHFSSCSDRFRLIFLKPQCSKQFRTFGTSSAVAADGNGDTFFAAESVSWTSLGLSSKISRALADSGIERPSLIQAACIPSIISGKDVVIAAETGSGKTHSYLAPLINQLCTTPDSKSTDSVEGVNPSHRFVLVLCPNVLLCQQVVQMANGFCDGSGGPLLRVAAVCGKQAYNIFFLETFNEPDIIVSTPAALLNYIEPNKNHRLLFLRAVKYVVFDEADMLLGGGFLNKVIRLIHMLRFDEKLLSSSKKDPERSLDSESDSLLRVTLEDENELQTKIFLEAEENYNEVMDVDDNSPEEENPEIGSIGRKDWRRVRKSYERSKQYIFVAATLPVNGKKTAGAVLKKLFPDATWISGNYLHCHSPRLEQRWIEVTIDTQVEELIKAVNQGSKSQPLHCGNIASRTMIFGNTVEAVEAVANILVKSGIECFRYHKDCTLEERAKTLAEFREKGGVLVCTDAASRGVDIPNVAHVIQADFATSAIDFLHRIGRTGRASNFGLVTSLYTESNRDLVSAVRRAGDLSQPVVLFSTF 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31895231 31898253 - BLOR17446 Blo06g00863 62156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00863 562 CDD SF2_C_DEAD 397 535 - -
Blo06g00863 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 538 IPR027417 -
Blo06g00863 562 SMART ultradead3 98 400 IPR014001 -
Blo06g00863 562 CDD DEADc 90 279 - -
Blo06g00863 562 Gene3D - 50 379 IPR027417 -
Blo06g00863 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 409 562 IPR001650 -
Blo06g00863 562 SMART helicmild6 446 526 IPR001650 -
Blo06g00863 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 49 554 - -
Blo06g00863 562 Pfam Helicase conserved C-terminal domain 431 525 IPR001650 -
Blo06g00863 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 381 IPR014001 -
Blo06g00863 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Blo06g00863 562 Pfam DEAD/DEAH box helicase 105 273 IPR011545 GO:0003676|GO:0005524
Blo06g00863 562 Gene3D - 385 554 IPR027417 -
Blo06g00863 562 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 554 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00863 - - - zju:107419889 650.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00863 Blo-Chr6:31895231 Blo16g00854 Blo-Chr16:35968974 5.81E-25 dispersed
Blo06g00863 Blo-Chr6:31895231 Blo01g00578 Blo-Chr1:6319798 3.55E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g772 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011112 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 31