Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00868 ATGATTCGGGCTATACGTACCTGTAAAACTGCAGCAGAAGAACGTGCTGTTATAAGAAAAGAGTGTGCTGCTATTCGTGCATCAATTGATGAAAATGATCATGATTATAGGCACCGTAACCTTGCTAAGCTTATGTTCATTCACATGCTTGGCTACCCCACACATTTTGGTCAAATGGAGTGCTTGAAATTGATTGCGTCAGCTGGTTTTCCTGAGAAGAGAATAGGGTATCTTGGCCTTATGTTGCTTCTTGATGAAAGACAAGAAGTTCTGATGTTGGTCACAAACTCATTAAAACAAGATTTGAATCATTCAAACCAGTATATTGTTGGACTTGCTCTTTGTGCTTTAGGAAATATTTGTTCGGCTGAAATGGCACGGGACCTTGCACCAGAAGTTGAAAGACTATTGCAATTTCGAGATCCGAATATTCGGAAGAAAGCAGCATTGTGTTCTATAAGGATTATAAAGAAAGTCCCAGACCTGGCAGAGAATTTTGTAAATCCTGCAACCTCCTTGCTAAAAGAAAAGCACCATGGTGTGCTCATCACAGGAGTTCAGCTATGTACAGATCTTTGTAAAGTTAGTTCAGAAGCTCTTGAATATTTTAGAAAGAAATGCACAGAGGGCTTGGTCAAGACGCTTAAGGATTTGGTTAACAGTCCATATGCACCAGAGTTTGATGTAGCTGGTATCACAGACCCATTCCTCCATATCCGGTTGCTTAGGCTTCTGCGTGTATTGGGCCATGGCGACGCTGATGCCAGTGACAATATGAATGATATACTTGCACAGGTGGCAACAAAAACTGAGTCAAACAAAAATGCAGGGAATGCCATTCTCTATGAATGTGTTGAAACTATAATGAGCATTGAGGATAATAGTGGTCTACGCGTGCTAGCTGTAAATATCTTGGGAAGATTCTTATCGAATCGCGACAATAATATCAGATATGTTGCGTTAAACATGCTCATGAAGGCTATTGCAGTCGATGCTCAAGCAGTACAAAGGCATCGGGCAACAATATTGGAATGTGTAAAGGATTCAGATGCTTCAATTCGTAAAAGGGCCCTTGAACTTGTTTATCTTCTAGTGAATGAGAGCAATGTAAGGACTCTTACCATAGAATTGATTGCATATCTGGAAGTAGCTGATGAAGAATTTAAGGGAGATCTTACGTCAAAAATTTGCTCAATTGTTGCAAAGTTTTCCCCAGAAAAGATTTGGTACATTGATCAAATGCTTAAGGTTCTTTCTGAGGCTGGAAATTTTGTTGAAGATGAGGTTTGGCATGCACTTATTGTCATGATAAGCAACGCGTCTGAGCTCCATGGATACACTGTGAGAGCATTATACAAAGCGTTCCAATCATCTATTGGACAGGAAAGTCTTGTTCGAGTGGCTGTGTGGTGCATTGGGGAATATGGTGACATGTTGGTTAATAATGTTAAGATGCTAGACATAGAGGATCCTATAACAGTAACGGAGTGTGATGCTGTGGATGTCATAGAGACTGCTATTAAACGCCATACTTCTGATCTTGCTACCCAATCAATGGCGCTGGTTGCTCTGTTGAAGCTTTCTTCACGTTTCCCATCTTCTTCAGGGAGGATCAAAGATATAATTGTCCAATACAAAGGAAGCCTGATTCTTGAATTGCAGCAAAGATCTATTGAATTCAACTCAATCACTGCAAAGCATCAACATATCAGGTCCACGCTAGTTGAAAGAATGCCAGTTCTGGATGAAGCAACATTTCTTGGAAGGAAGGCAGGTGCTATGTCGGCAACTGTCTCAACTTCAAATGGGGCATCAATTAATCTTCCAAATGGCATTGCTAAACCTGCAGCAGCTCCTCTAGTAGATTTACTTGATCTGAGTTTAGATGATACTCCTGTGACTAGCTCTTCAGGCAGTGATTTCCTCCAAGATCTTCTTGGTATCGATTTGTCACCGGCTCTGAATCACTCTGGTGCCAAGGAGGTCCAGAGAAGTGGTACAGATGTTCTACTGGATCTTTTGTCAATAGAGACATCTTCAGTAAACACCCCATTATCAAATGACATATTGGGCAAACCGGATAACAAGACACTTACGTCATTAGATGAACTGCCATCTCTTTCTCCACTTCCCACACTTGCTACTTCTGCTGCTGGAGCTGCTCCTGCTGTGGATTTGTTAAATGGCTTTGCACAAAACCCAACAAATTCTGGAGACACGAGTCTACAATATCCATCTGTTGTTGCATACGAGAGCAGCTCAGTGAGAATTACTTTTAACTTCTCTAAATTGCCTGGGAGTTCACAAACAACGTTGATCCAGGCTGCTTTTAATAATTTATCAACTAATACCTATACAAATTTTATTTTTCAAGCCGCAGTTCCAAAGTTTCTTCAATTGCAGCTAGATCCAGCGAGCGGCAATACTCTCCTTGGAAGTGGAAATGAATCCATCACTCAAACTTTAAGAGTGACAAATAGCCAACATGGAAAGAAATCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACGACAAAGACATTTTGGAGGAAGGACAAGTCAACAATTTTCCTCGTGGCTTATGA 2589 40.87 MIRAIRTCKTAAEERAVIRKECAAIRASIDENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFVNPATSLLKEKHHGVLITGVQLCTDLCKVSSEALEYFRKKCTEGLVKTLKDLVNSPYAPEFDVAGITDPFLHIRLLRLLRVLGHGDADASDNMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNSGLRVLAVNILGRFLSNRDNNIRYVALNMLMKAIAVDAQAVQRHRATILECVKDSDASIRKRALELVYLLVNESNVRTLTIELIAYLEVADEEFKGDLTSKICSIVAKFSPEKIWYIDQMLKVLSEAGNFVEDEVWHALIVMISNASELHGYTVRALYKAFQSSIGQESLVRVAVWCIGEYGDMLVNNVKMLDIEDPITVTECDAVDVIETAIKRHTSDLATQSMALVALLKLSSRFPSSSGRIKDIIVQYKGSLILELQQRSIEFNSITAKHQHIRSTLVERMPVLDEATFLGRKAGAMSATVSTSNGASINLPNGIAKPAAAPLVDLLDLSLDDTPVTSSSGSDFLQDLLGIDLSPALNHSGAKEVQRSGTDVLLDLLSIETSSVNTPLSNDILGKPDNKTLTSLDELPSLSPLPTLATSAAGAAPAVDLLNGFAQNPTNSGDTSLQYPSVVAYESSSVRITFNFSKLPGSSQTTLIQAAFNNLSTNTYTNFIFQAAVPKFLQLQLDPASGNTLLGSGNESITQTLRVTNSQHGKKSLVMRIRIAYKMNDKDILEEGQVNNFPRGL 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31968381 31978504 - BLOR17451 Blo06g00868 62161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00868 862 SUPERFAMILY ARM repeat 13 581 IPR016024 -
Blo06g00868 862 SMART alpha_adaptinc2 739 859 IPR008152 GO:0006886|GO:0016192
Blo06g00868 862 Gene3D - 742 861 - -
Blo06g00868 862 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 742 859 IPR008153 -
Blo06g00868 862 SUPERFAMILY Clathrin adaptor appendage domain 723 861 IPR013041 -
Blo06g00868 862 Pfam Adaptin C-terminal domain 745 859 IPR008152 GO:0006886|GO:0016192
Blo06g00868 862 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 1 861 - -
Blo06g00868 862 Gene3D - 1 582 IPR011989 -
Blo06g00868 862 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 1 861 - -
Blo06g00868 862 PIRSF AP1_gamma 1 862 IPR017107 GO:0005794|GO:0016192|GO:0030121
Blo06g00868 862 Pfam Adaptin N terminal region 14 565 IPR002553 GO:0006886|GO:0016192|GO:0030117
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00868 K12391 AP1G1; AP-1 complex subunit gamma-1 - qsu:112015360 1334.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00868 Blo11g00903 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00912 Blo-Chr3:35124159 Blo06g00868 Blo-Chr6:31968381 1.41E-59 dispersed
Blo06g00868 Blo-Chr6:31968381 Blo08g00030 Blo-Chr8:256779 2.49E-75 dispersed
Blo11g00903 Blo-Chr11:18436124 Blo06g00868 Blo-Chr6:31968381 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00868 Blo_Chr06 FPKM 17.564102 19.872751 17.92724 19.455462 25.884914 23.338015 26.821301 20.340506 21.338512 24.681997