Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00871 ATGGCGGAGGAGAGCGTTATCGGGTGTTCGACTGATTTGCCATTGAAGAGGCCGAGGGAAGAGAGTGAGAATGGGTTTTCAGCTCCAACTGTGGCTATGGCGGCGGAGGGGATTGAAGAGCCCGATTGTATTTCCTCTGTTATTCCTGGGTGGTTCTCGGAGGTCAGCCCAATGTGGCCTGGGGAGGCGCATTCCTTGAAGGTTGAGAAGATTTTATTTCAAGGGAAGTCGGATTATCAAAATGTCATGGTTTTTCAGTCATCGACTTATGGAAAGGTTCTTGTGTTGGACGGGGTGATTCAACTAACAGAGAGAGATGAATGTGCTTACCAAGAAATGATCACCCATCTTCCACTTTGCTCAATCCCAAACCCAAGAAAGGTTTTGGTTATTGGCGGTGGAGATGGTGGAGTCTTACGGGAAGTGTCTCGCCATTCATCTGTTGAACAAATTGACATATGTGAAATTGACAAGATGGTCATTGACGTCTCCAAAAAGTTTTTCCCAGATGTAGCGGTCGGGTATGAAGATCCCAGAGTGAAACTTTTTGTAGGCGACGGAGTTGCATATTTGAAGGCTGCTCCCGAAGGGACTTATGATGCAATTATAGTCGATTCTTCGGATCCAATAGGACCTGCACAAGAGCTTTTTGAGAAGCCCTTTTTTGAGTCGGTGGCAAAGGCTCTTCGGCCGGGAGGTGTTGTGTGTACTCAGGCAGAAAGTATATGGCTTCATATGCACATTATTGAAGACATCGTCGCAAACTGCCGCCAAATATTCAAAGGCTCAGTTAACTATGCATGGACTACTGTTCCTACTTATCCTAGCGGGGTGGTCGGTTTTATGCTTTGCTCCACAGAAGGACCCGCAGTCGATTTCAAGCACCCTGTGAGCTCAATCGACACGGATGATAGTTTCAACAAATCAAAAGGACCCTTGAAATTTTACAACCCCGAGATTCACTCGGCAGCTTTCTGTCTGCCAGCATTTGCGAAGAAAGTCATTGATTCGAAAGCAAAATGA 1023 46.33 MAEESVIGCSTDLPLKRPREESENGFSAPTVAMAAEGIEEPDCISSVIPGWFSEVSPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPRKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVIDVSKKFFPDVAVGYEDPRVKLFVGDGVAYLKAAPEGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVVGFMLCSTEGPAVDFKHPVSSIDTDDSFNKSKGPLKFYNPEIHSAAFCLPAFAKKVIDSKAK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32025650 32028341 - BLOR17454 Blo06g00871 62164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00871 340 Pfam Spermine/spermidine synthase domain 107 294 - -
Blo06g00871 340 Hamap Polyamine aminopropyltransferase [speE]. 50 336 IPR001045 GO:0003824
Blo06g00871 340 MobiDBLite consensus disorder prediction 1 25 - -
Blo06g00871 340 PIRSF Spermidine_synth 39 340 IPR030668 GO:0006595
Blo06g00871 340 CDD AdoMet_MTases 127 238 - -
Blo06g00871 340 Gene3D Spermidine synthase, tetramerisation domain 42 101 IPR037163 -
Blo06g00871 340 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Blo06g00871 340 PANTHER SPERMIDINE/SPERMINE SYNTHASE 6 340 IPR001045 GO:0003824
Blo06g00871 340 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Blo06g00871 340 Gene3D Vaccinia Virus protein VP39 102 340 IPR029063 -
Blo06g00871 340 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 286 IPR030374 -
Blo06g00871 340 TIGRFAM speE: spermidine synthase 51 330 IPR001045 GO:0003824
Blo06g00871 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 336 IPR029063 -
Blo06g00871 340 PANTHER SPERMIDINE/SPERMINE SYNTHASE-RELATED 6 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00871 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - jre:108987113 596.275
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00399 Blo06g00871 CCT
Blo01g00399 Blo06g00871 ECH
Blo06g00871 Blo11g00905 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00871 Blo-Chr6:32025650 Blo01g00399 Blo-Chr1:4520270 0 dispersed
Blo15g00090 Blo-Chr15:751268 Blo06g00871 Blo-Chr6:32025650 2.80E-138 transposed
Blo16g00968 Blo-Chr16:37950902 Blo06g00871 Blo-Chr6:32025650 2.24E-31 transposed
Blo18g00262 Blo-Chr18:2786909 Blo06g00871 Blo-Chr6:32025650 1.60E-32 transposed
Blo11g00905 Blo-Chr11:18562131 Blo06g00871 Blo-Chr6:32025650 1.45E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00871 Blo_Chr06 FPKM 4.829577 4.16838 4.276164 3.557618 0.0 0.0 0.0 0.0 0.0 0.089802