Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00872 ATGATCCGAAATCAACTACCCAATGGGTTGAATCGCCGGATTCTTACATTCCCTGCTGTTCATCCTTCCGATTGTATATCTCCGGCGACCCTCCTAACCTCTCTGGTTGAACTTGCTCGTGAAATTTGTAAATACAAATCACGTTTTTTAGCAAGCAACCGGCGAAATGCAAATGAAGCGATTCGTCAAGTAGGAATTCTTCTAGTTTTACTGGGAGAGGCCCTTGACAGGTTGGAAGTGGATCTTCCGAACTCTGTTGTCTTGAGCTTTTCGGAACTCCATTTGGCCTTTCAGAAGATTCTCTATCTTCTAGAAGACTGCACACGAGAAGGAGCTCGGCTATGGATGCTGATGAAATCCGAGTTCGTAGCAAATGAGTTCCGAGTTCTGTTCCGATCAATTGCAACGGATCTCGATGTTTTGCCTCTGGATTCGCTCTGCTTGTCTATTGAAGTTACTGAGCTCGTAGAGTTGATCGCAATGCAATCTAGGAAGGCGAGATTTGAAGTTGCAGCTAAAGATAAAGAAGCCTTGTCCGGATTGAAATCGATTCTGAAATCGATTGAGGATGGAATTGTTCCTAATAAGAGGGAACTTAGACGGGTTTTCGATCATTTGGGGATTAAGAAGTGGAGTTTGTGTAACAAGGAAGTGAAATTCTTGGAATCTGAAATGGCATTGGAGTGGTTAAGCAGGGATAATAGAGAGCTTGACTTACTTAGTAGTTTGATGGGGGTGGCGGCTTATTGCAGATGCGTGTTATTTGATTTTGTGGACGAAACATTTCGACAAACAGATGGTGGGCAGGATAGAGCTATTCTCAGCGGTCTGAATCCAGACGACTTTTGCTGTCCAATCACTCTAGAATTTATGAATGATCCTGTAACAATCGCAACAGGCCATACCTACGATCGATCTTCGATTGCGAAATGGTTCAGAGCAGGAAATCCAATCTGTCCAAAGACAGGAGAAAAGCTTGTCAGCAAAGAGGCGGTTCCTAATTTGGCTTTGAGGAGAATAATTCAGCTTTACTGCATCGAAAACGGCATTGCTCTTCCAAAATCAGGCAACAAAAAACGAGATATATCCATGACAGTATCGGCCGGAAGTTTAGGAGCTGAGCGAGCTGCAAAAATGGTGGTGGACTATTTAGCCACCCGGCTTTCAACTGCAACAGAGGAAGGGAAGAACAAGGCAGCATTTGAGATCAGATTACTCTCTAAAAAAAGCATTTTTTATAGATCTTGCATGGTTGAAGCAGGCGTAATTCCTAGCCTTTTAGATCTTCTCCACTCCTCCGATTCATTGAGCGAGGAAAATTCAAGCGCAGCCCTTTTGAATCTGTCCAAACATTCTACGAGCAAAAGCGAAATAATGGAAAATGATGGGTTGAACTCCATTGTTCACGTCTTGAAGAGTGGCAGTAAAGTCGGAGCCAGACAAAATGCTGCCGGAATCCTCTTCTACATCGCCTCGATTGAGAAATATCGGAGGCTAATCGGAGAAAACCATGAAGCCATTCAGGGTCTGATTGATCAGATTCGGAACGGACCCAATCGAAGCAAGAAGAACGCAATGGTAGCCATATTTGGTATACTAATGGAAGGTGAAAACCATAGATTAGTGTTGGAATTTGGAATAATCCCATTGCTAATCAATCTTTTGGCATCCAAAAACGATGATTTAGCCCTTGATTCTCTCGCAATTCTAGCGACTTTATCAGAAAAGCCAAACGGAGCAGCCGAGATACTGCAATCCGGAGGATTGAATTTGTTCATCGGATTGGCCGACACTACCGGATCGAAATCTGGGAAGGAGTATTGCATCTCATTATTGATAGGTTTGTGCAAATTTGGAGGTGAAAATGTAGAAGCACAGTTAGCCAAGAGCAAATCTCTAATGGCGGCATTGTATTCGTTACTCAGCCATGGCTCATCTCGAGCTCGGAAACGGGTAACTTCTCTGATCAGGATCCTCCATCGATATCATGAAAAGAGGTCATCTTTGTCTTCTCCATCGGTGAATCCACTTTCCTCTCAAGAGTTGTTCATTCATGTAAGATAG 2064 43.41 MIRNQLPNGLNRRILTFPAVHPSDCISPATLLTSLVELAREICKYKSRFLASNRRNANEAIRQVGILLVLLGEALDRLEVDLPNSVVLSFSELHLAFQKILYLLEDCTREGARLWMLMKSEFVANEFRVLFRSIATDLDVLPLDSLCLSIEVTELVELIAMQSRKARFEVAAKDKEALSGLKSILKSIEDGIVPNKRELRRVFDHLGIKKWSLCNKEVKFLESEMALEWLSRDNRELDLLSSLMGVAAYCRCVLFDFVDETFRQTDGGQDRAILSGLNPDDFCCPITLEFMNDPVTIATGHTYDRSSIAKWFRAGNPICPKTGEKLVSKEAVPNLALRRIIQLYCIENGIALPKSGNKKRDISMTVSAGSLGAERAAKMVVDYLATRLSTATEEGKNKAAFEIRLLSKKSIFYRSCMVEAGVIPSLLDLLHSSDSLSEENSSAALLNLSKHSTSKSEIMENDGLNSIVHVLKSGSKVGARQNAAGILFYIASIEKYRRLIGENHEAIQGLIDQIRNGPNRSKKNAMVAIFGILMEGENHRLVLEFGIIPLLINLLASKNDDLALDSLAILATLSEKPNGAAEILQSGGLNLFIGLADTTGSKSGKEYCISLLIGLCKFGGENVEAQLAKSKSLMAALYSLLSHGSSRARKRVTSLIRILHRYHEKRSSLSSPSVNPLSSQELFIHVR 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32032014 32034077 + BLOR17455 Blo06g00872 62165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00872 687 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Blo06g00872 687 Gene3D - 374 533 IPR011989 -
Blo06g00872 687 CDD RING-Ubox_PUB 282 324 IPR045210 -
Blo06g00872 687 Gene3D - 534 678 IPR011989 -
Blo06g00872 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 588 IPR000225 GO:0005515
Blo06g00872 687 SUPERFAMILY ARM repeat 380 674 IPR016024 -
Blo06g00872 687 Pfam U-box domain 279 348 IPR003613 GO:0004842|GO:0016567
Blo06g00872 687 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Blo06g00872 687 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 7 674 - -
Blo06g00872 687 PANTHER U BOX DOMAIN-CONTAINING 7 674 - -
Blo06g00872 687 SUPERFAMILY RING/U-box 278 353 - -
Blo06g00872 687 SMART arm_5 535 575 IPR000225 GO:0005515
Blo06g00872 687 SMART arm_5 451 492 IPR000225 GO:0005515
Blo06g00872 687 SMART arm_5 409 450 IPR000225 GO:0005515
Blo06g00872 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Blo06g00872 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00872 - - - cit:102608641 720.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00872 Blo-Chr6:32032014 Blo13g00851 Blo-Chr13:31131878 7.45E-106 dispersed
Blo16g00217 Blo-Chr16:4818514 Blo06g00872 Blo-Chr6:32032014 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g734 . . . . . . . Bma15g00190 . . . . . . Sed06g1631 . Cpe01g01524 Bhi07g01714 Tan04g1218 Cmetu10g0188 Lac13g0211 Hepe10g1648 . . Cla05g02532 Cam05g2722 Cec05g2753 Cco05g2794 Clacu05g2724 Cmu05g2578 Cre05g2692 Cone2ag0897 . . . Lsi04g00538 Csa05g02344 Chy10g00911 Cme10g00515 Blo06g00872 . . . . . . . . . . Cma04g01724 . Car04g01755 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002583 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00872 Blo_Chr06 FPKM 7.892689 9.490593 10.950697 12.591146 9.924603 9.840895 9.576127 2.23885 1.870809 1.561451