Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00874 ATGGCTGGAGGCTCGTTGGCGGCAGGCGGACTAATCGGCGGGCGAACCTCTGAACAGAGATGGCGACGGGTTTCTGTGCGGCGCTGGACAGTGGGACGGAAGTCTCTGTTCTTCGCTGCTTTGGTTCCTCGGAGACGGACGGCAGGGGAACGACGGATGGCGGACTCTGTCCCGGTCGGTGCGGCAGTGGTTGGTCTTCTCCTTGGCGACGACAGCCTGCGGCGATTGCGAGATCGGCTCTTCGCTGGAGAAACGCAGGCTGCGCTTCTGGTTTCTTCGAGGAGGACGACGCAGCAGGGGAAAATGGATCTAATTCGGGTTTACTCGGATCCGAACGACGAAATGCAGAATGAAAGCCCTAAATCTCTTTCGTCGTCGCCCGAAGCTTCTCCTCCTCGCCTTCTTCCTGCCAAATCGGCGGCGCCGAAGGTTGACGACACTACCCTAGCTCTTGCGGTGGCCGGCGCGAACCAGACTTTGTCTAAACCAATCGATCCGGTTCAGCACGTCGTTGCCTTCAATCCAACCTACGATCAGCTATGGGCGCCTATATACGGTCCTTCACACCCCTATGCGAAGGACGGAATCGCTCAGGGAATGCGGAATCACAAGCTGGGTTTTGTGGAGAATGCTTCGATTGAGTCGTTTGTTTTTGATGAACAGTACAACACTTTCCACAAGTATGGCTACGCTGCGGACCCGTCAGCTTCAACTGGATTCAATTACGTCGGCGATATGGACGCTCTGCAGAAGAACGACGCGATTTCTGTGTATAACATACCTCAACACGAGCAGAAAAAGCGAAAAATTGAGAAAAAGATGGAGCTGGATGAGGATGCAGATGAAAAACTCGATGAGGATTCTGCAGAGGTTGATAATCCGGCTACCGATGCGTGGTTGAAGAAGAATAGGAAGAGTCCTTGGTCGGGAAAGAAGGAAGGGCTGCAAACTGAGCTAACTGAGGAGCAGAAGAAGTATGCTGAAGAACACGCTAAGAAGAAAGGAGAAGAGAAAGGAGGGGAGAAGGCTGAAGTTATGGCAGACAAGAGTACTTTCCATGGGAAGGAGGAGAAGGATTATCAGGGTAGGTCTTGGATTGCACCGCCGAAGGATGCAAAAGCTTCAAACGACCATTGTTACATACCAAAAAGACTGGTCCATACTTGGAGTGGCCACACAAAGGGTGTGTCTGCAATTAGGTTTTTCCCTAAACATGGACACTTAATTTTATCTGCAGGGATGGACACTAAGGTGAAGATTTGGGATGTTTTCAATTCTGGAAAATGTATGAGAACCTACATGGGTCATTCGCAGGCGGTCCGAGATATTTCATTCTGCAACGATGGGACGAAGTTCTTAACTGCTGGCTATGATAAGAAGATAAAGTACTGGGACACAGAAACTGGCCAAGTGATATCAACTTTCTCGACTGGAAAGGTTCCTTATGTGGTTAAGCTCAATCCCGACGATGATAAGCAGAACATTCTGCTGGCTGGTATGAGTGATAAAAAGATTGTCCAGTGGGATATGAACACTGGACAAATCACTCAAGAGTATGATCAACATTTGGGGGCTGTAAATACCATTACATTTGTTGATAATAATAGGAGATTTGTCACTTCGAGCGATGATAAATCGCTTCGAGTGTGGGAATTCGGAATTCCGGTCGTTATCAAGTATATTAGCGAGCCCCACATGCATTCGATGCCGTCAATCGCGTTGCATCCCAATTCAAATTGGATTGCTGCCCAGAGTTTAGACAACCAAATCCTCATATATGGCACTAGGGAGAGGTTCCAGTTGAATAAGAAGAAGAGATTTGCTGGTCATATTGTTGCAGGGTATGCTTGCCAAGTTAATTTCTCACCTGATGGACGATTTGTGACGTCAGGCGATGGTGAAGGAAGGTGCTGGTTTTGGGACTGGAAGAGTTGTAAAGTCTTCAGAACTCTTAAGTGTCATAATGGAGTTTGCATTGGCTGTGAGTGGCATCCTTTAGAACAGAGTAAAGTAGCAACATGTGGGTGGGATGGATTGATAAAATATTGTTCTCTGGCGATCAGTCGTCGCCTGGCCTACTTGTTCTTATTCCGGTTGCCAATCGAGATATCAAGTGACTGGACTAGTTGTTTAACCGAAGAGGATGTGGTGCTGCTGCTTTTCTTCGAATTCGGAAGGTTACCCGTTAAACTCGGACTACGGATCAACTATTTCGTGCTAAAAATGCGAATCCTGTACTTCGATTTCCTTTCTCTGTGA 2259 48.03 MAGGSLAAGGLIGGRTSEQRWRRVSVRRWTVGRKSLFFAALVPRRRTAGERRMADSVPVGAAVVGLLLGDDSLRRLRDRLFAGETQAALLVSSRRTTQQGKMDLIRVYSDPNDEMQNESPKSLSSSPEASPPRLLPAKSAAPKVDDTTLALAVAGANQTLSKPIDPVQHVVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIESFVFDEQYNTFHKYGYAADPSASTGFNYVGDMDALQKNDAISVYNIPQHEQKKRKIEKKMELDEDADEKLDEDSAEVDNPATDAWLKKNRKSPWSGKKEGLQTELTEEQKKYAEEHAKKKGEEKGGEKAEVMADKSTFHGKEEKDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGTKFLTAGYDKKIKYWDTETGQVISTFSTGKVPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIALHPNSNWIAAQSLDNQILIYGTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVTSGDGEGRCWFWDWKSCKVFRTLKCHNGVCIGCEWHPLEQSKVATCGWDGLIKYCSLAISRRLAYLFLFRLPIEISSDWTSCLTEEDVVLLLFFEFGRLPVKLGLRINYFVLKMRILYFDFLSL 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32038772 32042258 - BLOR17457 Blo06g00874 62167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00874 752 Coils Coil 752 752 - -
Blo06g00874 752 Pfam WD domain, G-beta repeat 606 641 IPR001680 GO:0005515
Blo06g00874 752 Pfam WD domain, G-beta repeat 427 465 IPR001680 GO:0005515
Blo06g00874 752 Pfam WD domain, G-beta repeat 513 550 IPR001680 GO:0005515
Blo06g00874 752 Pfam WD domain, G-beta repeat 384 422 IPR001680 GO:0005515
Blo06g00874 752 ProSitePatterns Trp-Asp (WD) repeats signature. 409 423 IPR019775 -
Blo06g00874 752 MobiDBLite consensus disorder prediction 279 320 - -
Blo06g00874 752 Gene3D - 369 684 IPR015943 GO:0005515
Blo06g00874 752 CDD WD40 385 681 - -
Blo06g00874 752 SMART WD40_4 382 422 IPR001680 GO:0005515
Blo06g00874 752 SMART WD40_4 600 641 IPR001680 GO:0005515
Blo06g00874 752 SMART WD40_4 512 551 IPR001680 GO:0005515
Blo06g00874 752 SMART WD40_4 426 465 IPR001680 GO:0005515
Blo06g00874 752 SMART WD40_4 644 684 IPR001680 GO:0005515
Blo06g00874 752 SMART WD40_4 555 594 IPR001680 GO:0005515
Blo06g00874 752 SMART WD40_4 468 509 IPR001680 GO:0005515
Blo06g00874 752 MobiDBLite consensus disorder prediction 109 141 - -
Blo06g00874 752 PANTHER PRE-MRNA-PROCESSING FACTOR 17 150 683 IPR032847 GO:0000398|GO:0071013
Blo06g00874 752 MobiDBLite consensus disorder prediction 112 129 - -
Blo06g00874 752 SUPERFAMILY WD40 repeat-like 380 681 IPR036322 GO:0005515
Blo06g00874 752 ProSiteProfiles Trp-Asp (WD) repeats profile. 433 474 IPR001680 GO:0005515
Blo06g00874 752 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 423 IPR001680 GO:0005515
Blo06g00874 752 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 519 551 - -
Blo06g00874 752 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 551 IPR001680 GO:0005515
Blo06g00874 752 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 433 470 - -
Blo06g00874 752 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Blo06g00874 752 PRINTS G protein beta WD-40 repeat signature 452 466 IPR020472 -
Blo06g00874 752 PRINTS G protein beta WD-40 repeat signature 538 552 IPR020472 -
Blo06g00874 752 MobiDBLite consensus disorder prediction 304 320 - -
Blo06g00874 752 Coils Coil 312 332 - -
Blo06g00874 752 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00874 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - csv:101214854 1051.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00874 Blo11g00912 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00874 Blo-Chr6:32038772 Blo05g00724 Blo-Chr5:25414576 2.79E-24 dispersed
Blo07g00929 Blo-Chr7:28416929 Blo06g00874 Blo-Chr6:32038772 6.30E-50 transposed
Blo11g00655 Blo-Chr11:6920960 Blo06g00874 Blo-Chr6:32038772 1.61E-13 transposed
Blo11g00913 Blo-Chr11:18860874 Blo06g00874 Blo-Chr6:32038772 1.33E-63 transposed
Blo16g00611 Blo-Chr16:24709245 Blo06g00874 Blo-Chr6:32038772 3.22E-166 transposed
Blo11g00912 Blo-Chr11:18859564 Blo06g00874 Blo-Chr6:32038772 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42