Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00876 ATGCAAGCGGCTCAGCTTGTTTCTATCTCTTCCTCATACGATTCCTGTTCCGCCTCCGGATGTTCGGAAGTTGCCGGTAAGCTGAGCGAATTACTCACCCGAAAGCTTGACTTTAATGGCGGTATTAGTAATGGAGTCTTAGAAAATAACTGCGTCGAAGAAAAGGGTGGACGTGTAGATGAATTGCAAGAGGAAGAAGATGAAGACGAAGGTAAAGGAGAGAGCGATGGAGATGATGATTTCTCTTTTGCTTGCTTGAATCCTGACCGATCATTGACCAGCGCAGACGATATCTTTCAGGACGGTCAGATCCTTCCCATATTTCCGTTGTTCAATAGAGATCTTCTGCTTTCTGACGCCACCAACGGCGATTCTGCTGCGGAAGAGGTGTTATCTCTTCGGTCGCCGATCAAGAAGGTGTTCATTAAAGAACGAAAAACTCTGTCGCCATCTGAATCCGACGAGTTGGCTGAAGTAGCAGCTGGAACGTACTGCGAATGGTCGAGAAAAGCGGAAGAAACGTCGTCGGAGCTCTGCAAGAAAAGTAACTCCACAGGATTCTCGAAACTATGGAGGTTTAGAGAATTAGTTCACCACCGAAGCAACAGCGACGGAAAAGATGCTTTCGTCTTCTTAAACAGTCCATCATTTTCGGCGGCCGGGAGATCAAACAAGGAGAAGGTCGAGAAAGTCGCTGAGATTTCGGAGAAGAAGGAGAGGCCAGGGGAGGAGGGTAGGAGCGGAGGGGGGAAGATAAAGGAGAAGGAGAGGGAAGTTGTGAGGGGGAAAACGACGTCGTCCGTGCACAATAGGCCATACGCCGGAGCCAGAAGGATGGGTCAGAAAGAGGGAGTCAAACGGAAATCTTACCTGCCTTACCGACAAGATCTCGTCGGAATGGGATTCTTCACGAGTGTGAATGGATTGATTCTGGTAGATTTGCTGGATATGGCGGATTCAAAACCAGGACTAAGAAAACCGGTCTTCACCAAGGTCGACCAGCTCCGACCAGGAACCAATGGACGCACACTCACCGTCAAGGTTGTTAGCACAAAGATGGTTTTGCAGAAAGGCCCTCAGCCCCGTCAAATGCGCATTTCCGAGTGCTTGGTTGGTGACGAGACTGGACTGATTATATTTACTGCCAGAAACGAGCAAGTGGAGTTGGTGAAAGAGGGCAGTACTATAATCTTAAGAAATGCGAAGATCGATATGTTTAAAGGATCGATGAGACTTGCTGTGGATAAATGGGGAAGAGTCGAAGTCGCCGAGCCAGCAAGTTTTACAGTGAAAGTTGATAACAATCTGTCGCTGATCGAGTACGAGCTAGTTAACGTTGGTTGTTAG 1347 48.11 MQAAQLVSISSSYDSCSASGCSEVAGKLSELLTRKLDFNGGISNGVLENNCVEEKGGRVDELQEEEDEDEGKGESDGDDDFSFACLNPDRSLTSADDIFQDGQILPIFPLFNRDLLLSDATNGDSAAEEVLSLRSPIKKVFIKERKTLSPSESDELAEVAAGTYCEWSRKAEETSSELCKKSNSTGFSKLWRFRELVHHRSNSDGKDAFVFLNSPSFSAAGRSNKEKVEKVAEISEKKERPGEEGRSGGGKIKEKEREVVRGKTTSSVHNRPYAGARRMGQKEGVKRKSYLPYRQDLVGMGFFTSVNGLILVDLLDMADSKPGLRKPVFTKVDQLRPGTNGRTLTVKVVSTKMVLQKGPQPRQMRISECLVGDETGLIIFTARNEQVELVKEGSTIILRNAKIDMFKGSMRLAVDKWGRVEVAEPASFTVKVDNNLSLIEYELVNVGC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32050483 32053042 - BLOR17459 Blo06g00876 62169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00876 448 MobiDBLite consensus disorder prediction 60 76 - -
Blo06g00876 448 Pfam Protein of unknown function (DUF1645) 95 292 IPR012442 -
Blo06g00876 448 Gene3D - 339 438 IPR012340 -
Blo06g00876 448 PANTHER - 1 310 - -
Blo06g00876 448 SUPERFAMILY Nucleic acid-binding proteins 323 446 IPR012340 -
Blo06g00876 448 MobiDBLite consensus disorder prediction 232 264 - -
Blo06g00876 448 MobiDBLite consensus disorder prediction 55 81 - -
Blo06g00876 448 CDD SoSSB_OBF 343 422 - -
Blo06g00876 448 MobiDBLite consensus disorder prediction 232 281 - -
Blo06g00876 448 PANTHER DUF1645 FAMILY PROTEIN 1 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00876 - - - jcu:105644590 234.187
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00876 Blo11g00914 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00876 Blo-Chr6:32050483 Blo13g00418 Blo-Chr13:24150015 2.20E-24 dispersed
Blo17g00300 Blo-Chr17:3143868 Blo06g00876 Blo-Chr6:32050483 3.28E-24 dispersed
Blo18g00334 Blo-Chr18:3468717 Blo06g00876 Blo-Chr6:32050483 1.22E-14 dispersed
Blo11g00914 Blo-Chr11:18868270 Blo06g00876 Blo-Chr6:32050483 6.58E-83 wgd
Blo16g01158 Blo-Chr16:40104742 Blo06g00876 Blo-Chr6:32050483 7.09E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g714 . . . Bda11g01264 . Bpe10g00838 Bma14g01791 Bma15g00186 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1037 Cone19ag1028 . Cone12ag0641 . . . . Blo06g00876 Blo11g00914 Bda07g01600 Bda11g01264 . . Bma01g00050 . . . . . Cma05g00010 . Car05g00008 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008882 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00876 Blo_Chr06 FPKM 12.511628 15.434616 3.621322 4.729052 3.682652 2.95589 3.440092 0.0 0.0 0.0