Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00885 ATGCAAATAAAGAGACATCATCAGTCGCAAATTATCGTGCTGCTTCACAAGCAGAACGACAGTGGCACTGTCGTCCCTCCCCTCCATCGACAGAAAAACCAGAAAAGCTTGGAACTTCGTTACACCCCTTATCTCTCTCTCGAGCTCCATTTCGCTTTGAGGATTGAGAGGGGTTCTAAAATGGCGATTCTAGCATCACTTAATGTAATCAACCTCTTCTCCTCCCTTCCTTCGAAGCCACCTTCGAATGACGCCATGTCCACCTCTTTCTCAGCTCCCTCTTCCCCTATTCCCATTCCTAAATACCCTCCACCCAAATCTCGAAATCCCCCTCCTACGGCGGCGCCTCCCAATCCCGCTCTCAAGACTTTCCACCGCCGAACAAAATACTTCAAACCAATTAAGGACGGCGTCATCTCCTCAGACGGAGATCGTTCCGTCGTCTTGGGTGACTCCGGCGTCTCATATCTACTTCCCGGAGCTCCATTCGAGTTTCAATACAGCTATTCCGAGATCCCCAAGGAAAAGCCTTTGGCAATTCGGGAGCCAGCTTTCTTGCCATTTGCGCCTCCTACTATGTCGAGGCCTTGGACTGGTAAAGCTCCATTGAAGAGCTCCAAGAAAAAGATTCCTCTTTTCGATTCATTCAATCCGCCCCCACCTGGGTCAAAAGGAGTGAAGCACATGGAGATGCCGGGTGCGTTTCCATTCGGAAAGTATCCAAAGGAGGGGAAAACACGAGAAGAGATACTTGGGGAGCCACTAAAGAAGTGGGAGATTCAAATGCTTGTAAAACCATATCTATCTGATAATCGCCAAGTTAATCTAGGAAGGGATGGATTGACTCATAATATGTTGGAATTGATTCATTCGCATTGGAAGCGGCAGAGAGTTTGTAAAGTTAAATGTAAAGGTGTTCCGACTGTTGATATGAATAACATTTGTCGACACGCTGAGGAAAAAACAGGAGGAAAGATAATATATCGAGTAGGTGGTGTTTTGTATCTTTTCCGAGGAAGAAACTATGACTATCGTACTCGTCCACAATATCCAGTGATGCTATGGAAGCCAGCAGCTCCTGTCTATCCAAAACTTATTCAAGACGCACCAGAAGGACTGACAAGAGATGAAGCTGATGAGCTTCAGATGAAAGGCAAAAAACTTTTGCCAATTTGCAAATTAGCAAAAAATGGTGTCTATATCTGCCTGGTGAATGATGTTAGGCATGCTTTTGAAGGAAGTCCGTTGGTGAAAATTGATTGCACTGGAATGCATGCAAGTGATTACAAGAAGTTAGGTGCTAAGCTTAAGGTTGCGACAACCCGCCTTGTAAAGGTCAGGATAGCTCATGAATTGGTTCCTTGTGTGCTATTATCTTTTGATGAAGAACAGATCTTAATGTGGAGGGGAAAAGATTGGAAACCCATGTTTCCACAAGCTCCTTCAGCTCCATTTCTTCCTAAAGTTCTTAAAGCTGATTGTGTGGATGAAGCTGACAAAACGAAGGTAGACAGTTCTGAGACAGAGACTGCAAATACTGCCTTCCCCAACAAAAGCTCAAAAATGCTGTCTCTTTGGAGACGCGCGGTGGAATCGAACAGAGCATTGTTACTCGATGAAACCCCCCTCAGCCCGAATGCACTTTTGGATAAAGTGGAGGAATTCAATGGTATTTCACAGGCTGCAGAGCACTCTCATCCAATCCAGATTTTGTCCTCTCGACACGGTACGAGCTTTTCATCACCAGAATCGGAGCACGACCCTGAAAACAGAGAACCCTGGGAGGAAGAAGACTGA 1797 45.58 MQIKRHHQSQIIVLLHKQNDSGTVVPPLHRQKNQKSLELRYTPYLSLELHFALRIERGSKMAILASLNVINLFSSLPSKPPSNDAMSTSFSAPSSPIPIPKYPPPKSRNPPPTAAPPNPALKTFHRRTKYFKPIKDGVISSDGDRSVVLGDSGVSYLLPGAPFEFQYSYSEIPKEKPLAIREPAFLPFAPPTMSRPWTGKAPLKSSKKKIPLFDSFNPPPPGSKGVKHMEMPGAFPFGKYPKEGKTREEILGEPLKKWEIQMLVKPYLSDNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVKCKGVPTVDMNNICRHAEEKTGGKIIYRVGGVLYLFRGRNYDYRTRPQYPVMLWKPAAPVYPKLIQDAPEGLTRDEADELQMKGKKLLPICKLAKNGVYICLVNDVRHAFEGSPLVKIDCTGMHASDYKKLGAKLKVATTRLVKVRIAHELVPCVLLSFDEEQILMWRGKDWKPMFPQAPSAPFLPKVLKADCVDEADKTKVDSSETETANTAFPNKSSKMLSLWRRAVESNRALLLDETPLSPNALLDKVEEFNGISQAAEHSHPIQILSSRHGTSFSSPESEHDPENREPWEEED 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32091424 32095328 + BLOR17468 Blo06g00885 62178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00885 598 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 61 586 - -
Blo06g00885 598 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 61 586 IPR044599 GO:0000373
Blo06g00885 598 ProSiteProfiles CRM domain profile. 371 480 IPR001890 GO:0003723
Blo06g00885 598 SUPERFAMILY YhbY-like 373 476 IPR035920 -
Blo06g00885 598 MobiDBLite consensus disorder prediction 566 598 - -
Blo06g00885 598 Pfam CRS1 / YhbY (CRM) domain 258 338 IPR001890 GO:0003723
Blo06g00885 598 Pfam CRS1 / YhbY (CRM) domain 373 444 IPR001890 GO:0003723
Blo06g00885 598 SUPERFAMILY YhbY-like 254 348 IPR035920 -
Blo06g00885 598 Gene3D - 254 350 IPR035920 -
Blo06g00885 598 ProSiteProfiles CRM domain profile. 253 349 IPR001890 GO:0003723
Blo06g00885 598 MobiDBLite consensus disorder prediction 83 121 - -
Blo06g00885 598 MobiDBLite consensus disorder prediction 96 118 - -
Blo06g00885 598 SMART CRS1_YhbY_2 373 469 IPR001890 GO:0003723
Blo06g00885 598 SMART CRS1_YhbY_2 255 338 IPR001890 GO:0003723
Blo06g00885 598 Gene3D - 373 480 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00885 - - - cmo:103488994 724.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00885 Blo-Chr6:32091424 Blo16g01021 Blo-Chr16:38571319 8.94E-143 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35