Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00899 ATGGCTTCCTCCGCCACGTTTCTATCACCCACCACCGCGGCCGCCGCGTCCTCCTCCCTCACCCACTTCTCCAAAGCCCTCTTCCCCAATTTCCCCACATTTAAACCCAGTCCCAAACACAACAAAGGAATCTCCAGACTCCACGTGTCCTCCTCCACCAACAACCCCACATCCACCTCGGCCGCCAAAAAACCATCGGAAGAAACCATCTTCTTCGACGGCGGGGCCCACTACGGCGATCTTCTGGCCAATCTCATTCTGGGTTTCACTCTTCTCTGGCTCCCGCTAACCATAGCAGCTGTTTCGAGAGCTTTCTTTCTGAGGTACAGGTTCACTAACCTGCGGGTGACGGTGATTTCTGGACTGACGGGTGAGGATAGGAGCGATTTCTCTTACAAAGTGATCAAGGACGTTCAGGTGGTGCCACGTTTCATTGGAGAGTGGGGCGACATTATCATTACTCTCAAAGATGGAACTAAGGTTGACCTAAGGAGTGTTCCTAAGTTCAGAGAAATTGCCAAGTACTGTCTTTCTATGGCGGATAAAGGGGATGGGTCGGATGAAAGAAGAGCTAAAGGATTTTGGTCAATCATTGCCTCAAAATTCAAAGACAAAACAACTAGACAGTGCAGAAGGAGATGGTACACTTACTTGAATTCTGATTTTAAAAAAGGAGGCTGGTCTCCAGACGAAGATATCCTCCTCTGTCAGGCTCAAAAAATGTTCGGTAATAGATGGACGGAAATTGCGAGGGTGGTCTCAGGCAGAACGGACAATGCAGTGAAGAACCGATTTGCAACCCTCTGCAAAAAGAGATCAAAATATGTACAATTAGAGAAAGAGAATGAGAATTCATTCACCAACCTGAAGAACAATAGGGTAAATACAGATGGATTATCAGAAGGTACAATCCAGATGCAGGGGATAAGGTACTTCCAAATTGATAACTGCAGATTTGAGGAGAGATTAAACAAGAGGTTAAGAGCTCCATTCACAGAATTGAATCAAAACATTCATAATAGTGAGCATTTCTCAGCCCAGCAGAGTGTCAGCAAAGCCAAAGCAATCTTCAACGATGCTCGAGTGCAGAAGGATCAAGATACATTCATGCAAAAAGATGATCCAAAAAAATTTGCTTTAATGCAACAAGCAGAACTGCTAAGCTCACTTGCTGTTAAAGTTAATACAGAGAAAACAAAGCAAAGCCTAGAATATGCTTGGAAGGTCCTCCAAGAGTTTCTCAGCCAAAACAAAGAAAACTACGTCCATGAAATCGATCTTCGATCAGAAGATATTGAAGATTTGATAAAAGATTTACAAAGCAATAATGATGGTGACCAATTGAGAAAATCTGATCTACGCGAATCTCCTGCAAGTTCAGAACATAGTACAGGATCAACTCTACAGCTGCCCAGAGCTCGCAATAAAACAAATCAAAGTGATATTGAGATCATGAAAGTAAATCAGAACTTTAGAAAGCGCGATGATGAAACTCAAAATCTGCATACCGTCAATCCAGGAGACAATTTGCAGAGTGTTCATGAAATAACCAATGCCGTGGTATCTTCTTCCTTGTCAAACATAAATTTTGATTCCTCTATTCTCTTAACTCCACAATTCAAATCCTTGGGAATGCGAATCCAGAGTCCACAATTCTCTGAAAGTGAGAGGAAATTTCTGCTTAAGACATTAGGCATGGAGTCCCCTTCCCCTAACCAGCGAGCCAACTCTTCAAAAGCACCAGCTTGCAAAAGAGCCCTCCTTAAAAGTCTCTAA 1776 43.36 MASSATFLSPTTAAAASSSLTHFSKALFPNFPTFKPSPKHNKGISRLHVSSSTNNPTSTSAAKKPSEETIFFDGGAHYGDLLANLILGFTLLWLPLTIAAVSRAFFLRYRFTNLRVTVISGLTGEDRSDFSYKVIKDVQVVPRFIGEWGDIIITLKDGTKVDLRSVPKFREIAKYCLSMADKGDGSDERRAKGFWSIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPDEDILLCQAQKMFGNRWTEIARVVSGRTDNAVKNRFATLCKKRSKYVQLEKENENSFTNLKNNRVNTDGLSEGTIQMQGIRYFQIDNCRFEERLNKRLRAPFTELNQNIHNSEHFSAQQSVSKAKAIFNDARVQKDQDTFMQKDDPKKFALMQQAELLSSLAVKVNTEKTKQSLEYAWKVLQEFLSQNKENYVHEIDLRSEDIEDLIKDLQSNNDGDQLRKSDLRESPASSEHSTGSTLQLPRARNKTNQSDIEIMKVNQNFRKRDDETQNLHTVNPGDNLQSVHEITNAVVSSSLSNINFDSSILLTPQFKSLGMRIQSPQFSESERKFLLKTLGMESPSPNQRANSSKAPACKRALLKSL 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32230758 32237630 - BLOR17482 Blo06g00899 62192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00899 591 ProSiteProfiles Myb-like domain profile. 195 218 IPR001005 -
Blo06g00899 591 MobiDBLite consensus disorder prediction 440 457 - -
Blo06g00899 591 MobiDBLite consensus disorder prediction 440 480 - -
Blo06g00899 591 PANTHER BNAC02G34810D PROTEIN 193 588 - -
Blo06g00899 591 CDD SANT 227 268 IPR001005 -
Blo06g00899 591 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 219 273 IPR017930 -
Blo06g00899 591 SUPERFAMILY Homeodomain-like 197 278 IPR009057 -
Blo06g00899 591 SMART sant 223 271 IPR001005 -
Blo06g00899 591 SMART sant 163 220 IPR001005 -
Blo06g00899 591 Gene3D - 226 296 - -
Blo06g00899 591 MobiDBLite consensus disorder prediction 458 480 - -
Blo06g00899 591 Pfam Bacterial PH domain 106 176 IPR005182 -
Blo06g00899 591 CDD SANT 192 218 IPR001005 -
Blo06g00899 591 Gene3D - 166 221 - -
Blo06g00899 591 ProSiteProfiles Myb-like domain profile. 219 269 IPR001005 -
Blo06g00899 591 Pfam Myb-like DNA-binding domain 224 267 IPR001005 -
Blo06g00899 591 MobiDBLite consensus disorder prediction 38 62 - -
Blo06g00899 591 MobiDBLite consensus disorder prediction 44 62 - -
Blo06g00899 591 PANTHER MYB PROTEIN-RELATED 193 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00899 K09422 MYBP; transcription factor MYB, plant - tcc:18610458 410.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00899 Blo16g01126 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00899 Blo-Chr6:32230758 Blo07g01177 Blo-Chr7:31650149 6.96E-19 dispersed
Blo01g00419 Blo-Chr1:4724619 Blo06g00899 Blo-Chr6:32230758 1.80E-92 wgd
Blo16g01126 Blo-Chr16:39792572 Blo06g00899 Blo-Chr6:32230758 1.79E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g878 . Blo16g01126 Bda01g02168 . Bpe13g01423 . Bma14g01635 . Cmo04g01719 Cmo18g01189 . Cma18g01165 . Car18g01075 Sed12g2082 Cpe09g00163 Cpe01g01452 Bhi07g01592 Tan04g1106 . . . . . Cla05g02461 Cam05g2648 Cec05g2681 Cco05g2717 Clacu05g2651 Cmu05g2504 Cre05g2618 Cone13ag0971 Cone19ag0961 Cone6ag0605 Cone9ag0610 Lsi04g00444 Csa05g02430 Chy10g00983 Cme10g00435 Blo06g00899 . . . Bpe11g01632 Bpe02g02354 . . . . . Cma04g01641 . Car04g01682 . . Cpe07g00226 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004135 1 2 2 1 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12509 PF03703 bPH_2 2.40E-12 CL0266 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00899 Blo_Chr06 FPKM 0.627306 0.0 0.553832 1.647031 1.393832 1.994986 3.39207 1.081571 2.542076 1.884919