Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00910 ATGGGAAGGGTGAAACTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCCAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTATCAATATTGTGTGACATAGACATTATTCTTCTCATGTTTTCACCTACCGGAAAACCCTCTTTATGCAGCGGAAAGCGCAGTTCTATTGAAGAGGTCATTGCAAAGTTTGCTCAGCTAACTCCTCAAGAAAGGGCTAAAAGCAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGACCATGATGTTAATATTGAAGAATTTTTGGGTACAAGGCATGTGTATAGTACATACTCTGACTTGGCTAGCCAAGCTAAGTTATTACAGGCTCAACTTTCTGAAGTACACAATAGATTGAGCTATTGGACGAATCCCGATAAGATAAATAGTGTAGAGCATTTGACCCAAATGGAAAATTCTCTGAGGGAATCACTCAACCAAATTCAAACTCACAAGGAAAATCTACAGAAGCATCCACTTATTCCACTAGAATGCTCTAGTCAGTTCCAAAATGCAATGCATATACCTTTTCGAATGGGCGCTGAGCAGCAGCTCCAACCTTTTTCGTGGATTCCAAACGACAATCATCCTATGGTTTTGCCCGAGGACCCGCACTTCATTCCCCATCGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTCGCTAGCTATTCTGGTTATTTCGGCACAGGAAGAAGTCCAGAGATGTCTAATTCTGGGCAAGAAAACGGAGTTCTCCATGAACTGAGCAGAACAGCAGCTCTAAGACCTCAATTGGGTGGGCAGTTTCCCTACCTGCCATACAATGTCAATTTTCTGAGCAATGCGAAATTCCAACCGACGGAGATGAATCCTCCCGAAAATCCCGTTGATTATCATGTTAATGGGAACTTTGAAACTCCGAGACCTGCATATGACTCCGCCAACAACAACTGGGCCTCAACTTCCGGCCCTTGTGCCGTAAATGTGTTTGACGACCGACTCTATCCTCAGGCATGTTATATCTCTCAAAACTGA 1071 43.04 MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCSGKRSSIEEVIAKFAQLTPQERAKSRKLESLEALKKTFKKLDHDVNIEEFLGTRHVYSTYSDLASQAKLLQAQLSEVHNRLSYWTNPDKINSVEHLTQMENSLRESLNQIQTHKENLQKHPLIPLECSSQFQNAMHIPFRMGAEQQLQPFSWIPNDNHPMVLPEDPHFIPHRDVECSASSSFASYSGYFGTGRSPEMSNSGQENGVLHELSRTAALRPQLGGQFPYLPYNVNFLSNAKFQPTEMNPPENPVDYHVNGNFETPRPAYDSANNNWASTSGPCAVNVFDDRLYPQACYISQN 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32381418 32383471 + BLOR17493 Blo06g00910 62203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00910 356 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Blo06g00910 356 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Blo06g00910 356 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 350 - -
Blo06g00910 356 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Blo06g00910 356 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 350 - -
Blo06g00910 356 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 Coils Coil 153 173 - -
Blo06g00910 356 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00910 Blo-Chr6:32381418 Blo14g00437 Blo-Chr14:5080090 8.50E-26 dispersed
Blo10g00112 Blo-Chr10:1208636 Blo06g00910 Blo-Chr6:32381418 2.79E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12512 PF00319 SRF-TF 3.30E-18 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00910 - - jre:109009266 514.227