Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00910 ATGGGAAGGGTGAAACTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCCAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTATCAATATTGTGTGACATAGACATTATTCTTCTCATGTTTTCACCTACCGGAAAACCCTCTTTATGCAGCGGAAAGCGCAGTTCTATTGAAGAGGTCATTGCAAAGTTTGCTCAGCTAACTCCTCAAGAAAGGGCTAAAAGCAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGACCATGATGTTAATATTGAAGAATTTTTGGGTACAAGGCATGTGTATAGTACATACTCTGACTTGGCTAGCCAAGCTAAGTTATTACAGGCTCAACTTTCTGAAGTACACAATAGATTGAGCTATTGGACGAATCCCGATAAGATAAATAGTGTAGAGCATTTGACCCAAATGGAAAATTCTCTGAGGGAATCACTCAACCAAATTCAAACTCACAAGGAAAATCTACAGAAGCATCCACTTATTCCACTAGAATGCTCTAGTCAGTTCCAAAATGCAATGCATATACCTTTTCGAATGGGCGCTGAGCAGCAGCTCCAACCTTTTTCGTGGATTCCAAACGACAATCATCCTATGGTTTTGCCCGAGGACCCGCACTTCATTCCCCATCGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTCGCTAGCTATTCTGGTTATTTCGGCACAGGAAGAAGTCCAGAGATGTCTAATTCTGGGCAAGAAAACGGAGTTCTCCATGAACTGAGCAGAACAGCAGCTCTAAGACCTCAATTGGGTGGGCAGTTTCCCTACCTGCCATACAATGTCAATTTTCTGAGCAATGCGAAATTCCAACCGACGGAGATGAATCCTCCCGAAAATCCCGTTGATTATCATGTTAATGGGAACTTTGAAACTCCGAGACCTGCATATGACTCCGCCAACAACAACTGGGCCTCAACTTCCGGCCCTTGTGCCGTAAATGTGTTTGACGACCGACTCTATCCTCAGGCATGTTATATCTCTCAAAACTGA 1071 43.04 MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCSGKRSSIEEVIAKFAQLTPQERAKSRKLESLEALKKTFKKLDHDVNIEEFLGTRHVYSTYSDLASQAKLLQAQLSEVHNRLSYWTNPDKINSVEHLTQMENSLRESLNQIQTHKENLQKHPLIPLECSSQFQNAMHIPFRMGAEQQLQPFSWIPNDNHPMVLPEDPHFIPHRDVECSASSSFASYSGYFGTGRSPEMSNSGQENGVLHELSRTAALRPQLGGQFPYLPYNVNFLSNAKFQPTEMNPPENPVDYHVNGNFETPRPAYDSANNNWASTSGPCAVNVFDDRLYPQACYISQN 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32381418 32383471 + BLOR17493 Blo06g00910 62203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00910 356 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Blo06g00910 356 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Blo06g00910 356 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 350 - -
Blo06g00910 356 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Blo06g00910 356 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 350 - -
Blo06g00910 356 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo06g00910 356 Coils Coil 153 173 - -
Blo06g00910 356 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00910 - - - jre:109009266 514.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00910 Blo-Chr6:32381418 Blo14g00437 Blo-Chr14:5080090 8.50E-26 dispersed
Blo10g00112 Blo-Chr10:1208636 Blo06g00910 Blo-Chr6:32381418 2.79E-15 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12512 PF00319 SRF-TF 3.30E-18 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00910 Blo_Chr06 FPKM 11.471901 11.823933 13.551082 13.732904 14.147895 12.90528 13.853907 28.109241 26.284678 26.944563