Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00922 ATGCTTGCTTATGCAGAATCACCAGAGCTTTCTCGGTCAGGCGCTTCGGTTCACTCCGCTTCCGAGAACTCGTGTTGTTACTTACTGGGTTTGTGCGGAAACATCAATTCTTTAACGAAAATCCATGGTTTGCTTCTTGTTCATGGTATAGTTGGGGATATTCAGCTTGATACTAAATTAGTTAGTGTTTATGGTTCATTTGGGGACCTTCGTTCTGCCCGTATAGTGTTTGATAAAATGCTCAACCCAGATCTTTATTCGTGGAAGGTAATGATTAGGTGGTATTTTTTGAATGATTTGTACTCAGAGGTTATTGGATTATATAAATGTATGAATATTCGTTGCAGAGAAAGCGATAACATTGTTTTTTCGATCGTGCTGAAAGCATGTAGCGAATTACGGGACGATAATATAGGGAGGAAGGTACACTGCCAAATTGTTAAGGTAGGGTGTCCAGATAGTTTTGTATTGACCTCTTTGGTTGATATGTATTCAAAGTGTGGGCAAATAGAGTGCTCGGAGAAAGTGTTTGATGGGATTCTGGAGAGAAATATTGTTTGTTGGACATCGATGGTTGTGGGATATGTGCAGAACGACTGTCCAAAAGAGGGTTTGATTTTGTTCAATCGGATGAGAGAAGGGAATGTTGAAGGAAACCAATTTACCTTAGGCAGTCTAGTCACTGCCTGTGCAAAGCTAGGAGCTTTGCACCAAGGGAAATGGGTACATGGATATGCCATTAAGAACGGTTTTGAATTCAACTCTTATACTTTGACGGCTCTCGTAGATATGTATGTCAAGTGTGGATACGTTAGAGATGCCCGTGTGATATTTGATGAATTCTCAAGCGTTGATCTTGTTTCGTGGACAGCCATGATCGTTGGGTATGCACAAAACGGCTGTCCTCGTGAGGCCTTGAAATTGTTTGCTGATCCAAAATGGTCTGATCTTTTGCCTAATTCTATAACAGCAGCTAGCGTACTTTCATCATGTGCGCAACTACGGAATTTGAGTTTTGGAAGATCGATTCATGGTATTGGAATAAAACTCGGGTTAGAAGAATCTGTTGTAAGAAATGCTCTTGTGGATATGTATGCTAAATGCCATATGATAAATGATGCTCATGTTATCTTCGAGACGATATCTGACAAGGATTTGATTACTTGGAACTCAATGATATCCGGGTATTTGGAAAATGGATTTGCAAATGAATCCCTTCAACTTTTTCATACAATGATCTCAGATTCGTTTGCCCCCGATGCAGTCAGTTTGGTGAGTGTCCTTTCAGCCTCAGCTTCCCTCAGCGCACTTCAGCTCGGGTCATCTCTTCACGCTTACTCTATTAAGGAGGGTCTTTTGGCATCTAATCTCTATTTAGGCACAGCTCTTCTGAACTTTTATGCAAAATGTGGCGATCCTAAATCCGCACGAATGGTGTTTGATGGCATGGTAGAGAAGAACATCATCACATGGAGTGCTATGATCACCGGCTATGGTTTGCAGGGGGACGGAAGTGGATTGCTAAAACTTTATAATGATCTTATGAAGGAGGAACTAAAGCTGAATGAAGTGATTTTCACAGCAATTTTATCAGCTTCCAGCCATACTGGAATGGTTGCAGAAGGATGGAAGTATTTCAAATCCATGTGTGAGGAGTATAACTTCAGCCCTTCTTCAAAGCACTATGCTTGTGTAGTTGATCTTTTGGCTCGGGCCGGTCGGCTTGAGGAAGCCCTAGATTTTATTGAGAAAATGCCGGTTCGACCAGAGGTTGGTTTGTTTGGAGCTTTTCTTCATGGTTGCGGATTATATGCAAGATTAGATCTTGCCGAAGTGGCAATCAAAAGAATGTTGAAGATGCATCCTGAAGAAAGTTGTTATTATGTGCTCATATCTAATCTGTATGCTTTGGATGGAAGATGGAGTCAGGTTAATGAAGTTAGAGCTCTAATGAAGAAAAGAGGATTGAGCAAAAGCCCTGGTCTTAGCCTTGTAGAATCTGACATAAATGCTCCTACTTCATGGATTTGA 2031 41.11 MLAYAESPELSRSGASVHSASENSCCYLLGLCGNINSLTKIHGLLLVHGIVGDIQLDTKLVSVYGSFGDLRSARIVFDKMLNPDLYSWKVMIRWYFLNDLYSEVIGLYKCMNIRCRESDNIVFSIVLKACSELRDDNIGRKVHCQIVKVGCPDSFVLTSLVDMYSKCGQIECSEKVFDGILERNIVCWTSMVVGYVQNDCPKEGLILFNRMREGNVEGNQFTLGSLVTACAKLGALHQGKWVHGYAIKNGFEFNSYTLTALVDMYVKCGYVRDARVIFDEFSSVDLVSWTAMIVGYAQNGCPREALKLFADPKWSDLLPNSITAASVLSSCAQLRNLSFGRSIHGIGIKLGLEESVVRNALVDMYAKCHMINDAHVIFETISDKDLITWNSMISGYLENGFANESLQLFHTMISDSFAPDAVSLVSVLSASASLSALQLGSSLHAYSIKEGLLASNLYLGTALLNFYAKCGDPKSARMVFDGMVEKNIITWSAMITGYGLQGDGSGLLKLYNDLMKEELKLNEVIFTAILSASSHTGMVAEGWKYFKSMCEEYNFSPSSKHYACVVDLLARAGRLEEALDFIEKMPVRPEVGLFGAFLHGCGLYARLDLAEVAIKRMLKMHPEESCYYVLISNLYALDGRWSQVNEVRALMKKRGLSKSPGLSLVESDINAPTSWI 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32470169 32472199 + BLOR17505 Blo06g00922 62215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00922 676 Pfam PPR repeat 489 517 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 387 415 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 157 185 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 186 215 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 562 586 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 287 309 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 524 551 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 257 280 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 461 488 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 86 111 IPR002885 -
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 140 239 IPR011990 GO:0005515
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 240 339 IPR011990 GO:0005515
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 353 441 IPR011990 GO:0005515
Blo06g00922 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Blo06g00922 676 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 41 671 - -
Blo06g00922 676 PANTHER OS07G0578800 PROTEIN-RELATED 41 671 IPR045215 GO:0003723|GO:0009451
Blo06g00922 676 Pfam E motif 604 666 IPR046848 -
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 8 139 IPR011990 GO:0005515
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 462 675 IPR011990 GO:0005515
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 287 310 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 489 522 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 461 488 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 524 558 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 562 585 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 387 421 IPR002885 -
Blo06g00922 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Blo06g00922 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00922 Blo-Chr6:32470169 Blo13g00661 Blo-Chr13:29338213 1.16E-145 dispersed
Blo01g00445 Blo-Chr1:4917669 Blo06g00922 Blo-Chr6:32470169 4.04E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00922 - - qsu:112012181 949.888