Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00922 ATGCTTGCTTATGCAGAATCACCAGAGCTTTCTCGGTCAGGCGCTTCGGTTCACTCCGCTTCCGAGAACTCGTGTTGTTACTTACTGGGTTTGTGCGGAAACATCAATTCTTTAACGAAAATCCATGGTTTGCTTCTTGTTCATGGTATAGTTGGGGATATTCAGCTTGATACTAAATTAGTTAGTGTTTATGGTTCATTTGGGGACCTTCGTTCTGCCCGTATAGTGTTTGATAAAATGCTCAACCCAGATCTTTATTCGTGGAAGGTAATGATTAGGTGGTATTTTTTGAATGATTTGTACTCAGAGGTTATTGGATTATATAAATGTATGAATATTCGTTGCAGAGAAAGCGATAACATTGTTTTTTCGATCGTGCTGAAAGCATGTAGCGAATTACGGGACGATAATATAGGGAGGAAGGTACACTGCCAAATTGTTAAGGTAGGGTGTCCAGATAGTTTTGTATTGACCTCTTTGGTTGATATGTATTCAAAGTGTGGGCAAATAGAGTGCTCGGAGAAAGTGTTTGATGGGATTCTGGAGAGAAATATTGTTTGTTGGACATCGATGGTTGTGGGATATGTGCAGAACGACTGTCCAAAAGAGGGTTTGATTTTGTTCAATCGGATGAGAGAAGGGAATGTTGAAGGAAACCAATTTACCTTAGGCAGTCTAGTCACTGCCTGTGCAAAGCTAGGAGCTTTGCACCAAGGGAAATGGGTACATGGATATGCCATTAAGAACGGTTTTGAATTCAACTCTTATACTTTGACGGCTCTCGTAGATATGTATGTCAAGTGTGGATACGTTAGAGATGCCCGTGTGATATTTGATGAATTCTCAAGCGTTGATCTTGTTTCGTGGACAGCCATGATCGTTGGGTATGCACAAAACGGCTGTCCTCGTGAGGCCTTGAAATTGTTTGCTGATCCAAAATGGTCTGATCTTTTGCCTAATTCTATAACAGCAGCTAGCGTACTTTCATCATGTGCGCAACTACGGAATTTGAGTTTTGGAAGATCGATTCATGGTATTGGAATAAAACTCGGGTTAGAAGAATCTGTTGTAAGAAATGCTCTTGTGGATATGTATGCTAAATGCCATATGATAAATGATGCTCATGTTATCTTCGAGACGATATCTGACAAGGATTTGATTACTTGGAACTCAATGATATCCGGGTATTTGGAAAATGGATTTGCAAATGAATCCCTTCAACTTTTTCATACAATGATCTCAGATTCGTTTGCCCCCGATGCAGTCAGTTTGGTGAGTGTCCTTTCAGCCTCAGCTTCCCTCAGCGCACTTCAGCTCGGGTCATCTCTTCACGCTTACTCTATTAAGGAGGGTCTTTTGGCATCTAATCTCTATTTAGGCACAGCTCTTCTGAACTTTTATGCAAAATGTGGCGATCCTAAATCCGCACGAATGGTGTTTGATGGCATGGTAGAGAAGAACATCATCACATGGAGTGCTATGATCACCGGCTATGGTTTGCAGGGGGACGGAAGTGGATTGCTAAAACTTTATAATGATCTTATGAAGGAGGAACTAAAGCTGAATGAAGTGATTTTCACAGCAATTTTATCAGCTTCCAGCCATACTGGAATGGTTGCAGAAGGATGGAAGTATTTCAAATCCATGTGTGAGGAGTATAACTTCAGCCCTTCTTCAAAGCACTATGCTTGTGTAGTTGATCTTTTGGCTCGGGCCGGTCGGCTTGAGGAAGCCCTAGATTTTATTGAGAAAATGCCGGTTCGACCAGAGGTTGGTTTGTTTGGAGCTTTTCTTCATGGTTGCGGATTATATGCAAGATTAGATCTTGCCGAAGTGGCAATCAAAAGAATGTTGAAGATGCATCCTGAAGAAAGTTGTTATTATGTGCTCATATCTAATCTGTATGCTTTGGATGGAAGATGGAGTCAGGTTAATGAAGTTAGAGCTCTAATGAAGAAAAGAGGATTGAGCAAAAGCCCTGGTCTTAGCCTTGTAGAATCTGACATAAATGCTCCTACTTCATGGATTTGA 2031 41.11 MLAYAESPELSRSGASVHSASENSCCYLLGLCGNINSLTKIHGLLLVHGIVGDIQLDTKLVSVYGSFGDLRSARIVFDKMLNPDLYSWKVMIRWYFLNDLYSEVIGLYKCMNIRCRESDNIVFSIVLKACSELRDDNIGRKVHCQIVKVGCPDSFVLTSLVDMYSKCGQIECSEKVFDGILERNIVCWTSMVVGYVQNDCPKEGLILFNRMREGNVEGNQFTLGSLVTACAKLGALHQGKWVHGYAIKNGFEFNSYTLTALVDMYVKCGYVRDARVIFDEFSSVDLVSWTAMIVGYAQNGCPREALKLFADPKWSDLLPNSITAASVLSSCAQLRNLSFGRSIHGIGIKLGLEESVVRNALVDMYAKCHMINDAHVIFETISDKDLITWNSMISGYLENGFANESLQLFHTMISDSFAPDAVSLVSVLSASASLSALQLGSSLHAYSIKEGLLASNLYLGTALLNFYAKCGDPKSARMVFDGMVEKNIITWSAMITGYGLQGDGSGLLKLYNDLMKEELKLNEVIFTAILSASSHTGMVAEGWKYFKSMCEEYNFSPSSKHYACVVDLLARAGRLEEALDFIEKMPVRPEVGLFGAFLHGCGLYARLDLAEVAIKRMLKMHPEESCYYVLISNLYALDGRWSQVNEVRALMKKRGLSKSPGLSLVESDINAPTSWI 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32470169 32472199 + BLOR17505 Blo06g00922 62215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00922 676 Pfam PPR repeat 489 517 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 387 415 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 157 185 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 186 215 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 562 586 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 287 309 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 524 551 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 257 280 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 461 488 IPR002885 -
Blo06g00922 676 Pfam PPR repeat 86 111 IPR002885 -
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 140 239 IPR011990 GO:0005515
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 240 339 IPR011990 GO:0005515
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 353 441 IPR011990 GO:0005515
Blo06g00922 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Blo06g00922 676 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 41 671 - -
Blo06g00922 676 PANTHER OS07G0578800 PROTEIN-RELATED 41 671 IPR045215 GO:0003723|GO:0009451
Blo06g00922 676 Pfam E motif 604 666 IPR046848 -
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 8 139 IPR011990 GO:0005515
Blo06g00922 676 Gene3D Tetratricopeptide repeat domain 462 675 IPR011990 GO:0005515
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 287 310 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 489 522 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 461 488 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 524 558 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 562 585 IPR002885 -
Blo06g00922 676 TIGRFAM PPR: pentatricopeptide repeat domain 387 421 IPR002885 -
Blo06g00922 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Blo06g00922 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00922 - - - qsu:112012181 949.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00922 Blo-Chr6:32470169 Blo13g00661 Blo-Chr13:29338213 1.16E-145 dispersed
Blo01g00445 Blo-Chr1:4917669 Blo06g00922 Blo-Chr6:32470169 4.04E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g79 . . . . . Bpe10g00892 . Bma15g00138 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0919 . . . . . . Blo06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010395 1 1 1 1 1 1 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00922 Blo_Chr06 FPKM 10.867719 11.344029 17.481707 18.083536 18.032007 18.460699 18.212368 23.32342 21.542797 23.503227