Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00924 ATGGATATGGATATCGATCTCCCTCGGCCAGATCGCCAAATCAATGCCGATGATCTTTTCAGAGCAGCGGAGACCGGAGATTGTTCTTTTTTCGGAGCTCTTTCTCGAGAGCAGTGTCTCAGTGCTTTTTCTCTGAGAAATGAGGATTGCCGGTCCCTCCTCCATGTTGCTGCCTCTTCAGGCCGTACTGAGGTAGTGAAGTTGCTATCTGCATCTGATCAATCAGCTAGCGTGGTAAATAGTGCGGATGAAGAAGGGTGGGCACCGCTTCATTCTGCAAGTAGCATTGGAAATGCTGAAATAGTGGACATTTTATTAAGCATAGGTGCTGATATAAATTTGAAAAATGATGGTGGTCGAGCTGCTCTTCACTATGCAGCCAGCAAAGGATGGTTAAAGATTGCTCAAACTCTGATTTCACATGGGGCAAAGATCAATATGAAGGACAAGGTTGGTTGTACTCCACTGCATCGGGCTGCCAGCACAGGAAACTCAGAGTTGTGCGAGCTATTGATTGAGGAAGGAGCGGACCTTGATGCCATTGATAAAGCTGGTCAAACTCCTCTTATGCATGCAGCAATTTGTAACAACAGGGAGGTAGCTCTCCTTCTGGTAAGGCATGGAGCCAACCTCGACGTCGAAGACAAGGAAGGATATACAGTCCTGGGTGTGTCAAGTGATCTCAGACCAGCGCTAATCGATGCTGCAAAGGCAATGCATGAAGGATAA 729 47.05 MDMDIDLPRPDRQINADDLFRAAETGDCSFFGALSREQCLSAFSLRNEDCRSLLHVAASSGRTEVVKLLSASDQSASVVNSADEEGWAPLHSASSIGNAEIVDILLSIGADINLKNDGGRAALHYAASKGWLKIAQTLISHGAKINMKDKVGCTPLHRAASTGNSELCELLIEEGADLDAIDKAGQTPLMHAAICNNREVALLLVRHGANLDVEDKEGYTVLGVSSDLRPALIDAAKAMHEG 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32476791 32478715 - BLOR17507 Blo06g00924 62217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00924 242 Gene3D - 155 238 IPR036770 -
Blo06g00924 242 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Blo06g00924 242 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Blo06g00924 242 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Blo06g00924 242 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Blo06g00924 242 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Blo06g00924 242 SMART ANK_2a 184 213 IPR002110 GO:0005515
Blo06g00924 242 SMART ANK_2a 151 180 IPR002110 GO:0005515
Blo06g00924 242 SMART ANK_2a 49 78 IPR002110 GO:0005515
Blo06g00924 242 SMART ANK_2a 118 147 IPR002110 GO:0005515
Blo06g00924 242 SMART ANK_2a 85 114 IPR002110 GO:0005515
Blo06g00924 242 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Blo06g00924 242 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
Blo06g00924 242 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 41 145 - -
Blo06g00924 242 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 75 178 - -
Blo06g00924 242 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 148 222 - -
Blo06g00924 242 SUPERFAMILY Ankyrin repeat 19 224 IPR036770 -
Blo06g00924 242 Pfam Ankyrin repeats (3 copies) 44 116 IPR002110 GO:0005515
Blo06g00924 242 Pfam Ankyrin repeat 185 212 IPR002110 GO:0005515
Blo06g00924 242 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Blo06g00924 242 Pfam Ankyrin repeats (many copies) 120 172 IPR002110 GO:0005515
Blo06g00924 242 Gene3D - 10 154 IPR036770 -
Blo06g00924 242 PRINTS Ankyrin repeat signature 152 167 IPR002110 GO:0005515
Blo06g00924 242 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00924 K06694 PSMD10; 26S proteasome non-ATPase regulatory subunit 10 - mnt:21387749 371.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01165 Blo-Chr2:43306735 Blo06g00924 Blo-Chr6:32476791 2.79E-12 dispersed
Blo06g00924 Blo-Chr6:32476791 Blo12g00407 Blo-Chr12:21042084 2.80E-11 dispersed
Blo10g00394 Blo-Chr10:6721834 Blo06g00924 Blo-Chr6:32476791 7.68E-14 dispersed
Blo06g00924 Blo-Chr6:32476791 Blo16g00881 Blo-Chr16:36432056 8.22E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g73 . . . . . Bpe10g00893 . Bma15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0546 Cone9ag0556 . . . . Blo06g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009040 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00924 Blo_Chr06 FPKM 24.768148 25.220036 24.422344 27.33227 21.697695 16.627016 23.706917 23.6908 25.921482 29.180843