Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00929 ATGTGTGGAATCGCTTTGGTTGTCTCCGGAATACCTTTTGATTTCTCATCACTGCTCCTTGATTCCATTTATCCACCTTCAAATTCCGACCACCACAAGCCGGAGTTTTCCATTGATGATCTGAAAGCCGCTCTGAGGAGGAGGGGGCCCGACAGCTTGGGCAGCGCAAAAGTTAGGATTTTCCTATCGAAAACTTCCAGTTCGAGCGATGAAACGGAAGTCAAATCCGTAATTGAATGGGAAGAAGATGTAAGAGCTGCATCGTACTGTAAGGAAGAGTATGGGATGAATAACAATGGCTCTTGCATTGCGTCTTTAGGGCGTAGTTTACTCACTTCTGTTGCAGAATTGTATCTAATTGGAGCTACATTGCAGTTAAGAGGAATAAATCCTATCACCCAGCCTCTATTAGATGCAGCGGAAAATATCCTTGTTTACAACGGTGAAATATTTGGAGGAATTTATGTGGCTCGGGATTGTAACGATACAGAAACTCTTCTGCAATCTCTTGGTAAATGCTGCTCTTGTGTTTCTAGTTTTCATGAGAGAAATTGCTTCGTTGACGGAAAGAGGCAAAGTACTGTTCCAGAAGTTTTTTCCATGATTAAAGGGCCATGGTCAGTCATATATTGGCAGGATAGTACGAAGACTCTTTGGTTTGGCCGAGATGCATTTGGTAGGCGTAGCCTCCTTGTTCACTGGCCAACTCTGGAGGACTCCCGGTTTCTTTTATCTTCTGTATCTTCAGCTCTTTCAGTTGTTCAAGCTACTGGTTTTGAAGCAGAAACTGGGAGCAGGGAATTCAGCTTTTGGGAAGAGCTTCCATGTGGTATATACAGCTTGTCATTTGAGACTAAAAATTCAATTTGTTGTCTGACTGGTGAAATTAGAAAACATGAATTGACAAATGACGAGCTGAAAGCGTTGATTAAGTGGGAGAGAATCAATGTTGTACCTGCGCCTGAAGTTACGTGTTTTCCTGAGAATGAAATTTCGTTGGGGCCTTGCAACATTAATTCAGTTTCCTCAACAAAGCTGCTATCTGGAGCAGGTTCGTGGCTTAGACAACCTTCTGTTTCTCGGTGGGCAGAAACTGTGCTTGCTGCTCTAAAGGAATCTGTGATGCGACGATCTTCACTACATACAGTTTTCCAGGGAGTTTCATCTGATTCTATAATGGGGAATGTTGGGCCAGTGGCAGTTCTTTTTTCTGGTGGGTTGGATTCTATGATACTTGCGGCATTACTGGATCAGTGCCTAGACTGCTGCTTTGATATTGATCTTCTTAATGTGAGCTTTGATGGTCCATTTGCACCTGATAGAATATCTGCCAGGGACGGAATGAAGGAATTGAGAAGAATTTCACCTTTAAGAAGGGCTTTATCTCAAATCTTAAATTTTCTGATTATGGAAATTCTTAAATTGTGGAAGCTAGTGGAGATTGATGCTGATTTGGAAAATTTAATGTTCGAGACCAAGCATGTCATGTCGCTAATCAATCCTTCCAACACTTACATGGATATGAACATAGGAATAGCTTTATGGTTAGCTTCTGGTGGCGATGGTTGGATTTATGATGGAAGTGGTTATGATGACTACAATAGTCGACTTAAGTATAAATCGGGGGCCAGGATTCTTCTTGTTGGTTCTGGTGCTGATGAGCAATGTGCTGGCTATGGTCGACACAGAACAAAATACAGACATGGGAGCTGGGTTGGGTTACATGAGGAAATGAAATTGGACATGCAGAGAATTTGGAAGAGAAACCTGGGGAGAGATGATAGATGCATTGCCGACAATGGAAAGGAGGCCAGGTTTCCTTTCTTGGATGAGGACGTTATTAGAACCTTGCTAGATATTCCCTTGTGGGAGATTGCTGAGCTTGATAAACCTAGTGGAACAGGTGATAAGAAGATTCTCAGAGAGATGAAAACGCTAAAATTCAAGCAAACAAGGGCTTTGTTTCCCTTTAAACCTGCAGTTAAACCTACAGCTACAGCCAACCTATTATGTGTAGTCTTTAACTCTAAACAAATCTATCTTTTGCCTTTTATTTTAAGGTTGCCAAATTGCTTGGTTTACATGAAGCAGCAGTTTTACCAAAAAGAGCGATTCAGCGTTGGCAATTTATTTGAAGTCATGGCATATTCTGGGGATTCTAAGAAAAGAGAAGTGAGGATTCATGAAAGTTTGGATGAGCTTAGCACTGATCTGGCTGATCATATTGCGGAATTATCGGAGGATTCAGTGAAAGAAAGGGGAGTTTTTTCAATTGCCTTATCTGGTGGTTCTCTTATTAGCTTAATGGGGAAACTCACCCAAGTTCCATACAAAACGACCGTAGATTGGTCGAAATGGTACGTGTTTTGGGCCGATGAGCGCGTCGTCTCGAAAAGCCACTCCGACAGCAATTATAAGCTCGCAAAAGATGGCCTCTTGTCCAAGGTGCCCATTGTTCCGAGTCATGTGCACTCTATCAACGATTCAGTGTCAGCTGAGGAAGCAGCCTATGAATACGAGTTTATGATCCGGCAGTTAGTCAAATCACGCACGGTCAACGTATCCGACGTGAGTGATTGTCCCAAGTTCGACCTTATACTTCTCGGAATGGGAGAAGACGGTCATATCGCCTCGTTATTTCCCGGCCACTCGATCCTCGACCTTGAAGAAGAGTGGGTTACTTTTATTACTGATTCTCCCAAGCCACCGCCCGAGAGAATTACGCTCACATTGCCAGTAATAAACTCTGCATCCAATGTAGCTATAGTCGTGACCGGAAAATCCAAAGCCGAGACGGTGCATTTAGCAGTTGATGATGACATGGGATCGGATTGCTCGATACACCTTCCCGCTAGGATGGTGCAGCCGAGGACGGGAAAGCTTGTGTGGTTTTTGGATAAGCAAGCGGCTTCAAAACTCGATAGTTATGAGTTTTCCGACTAG 2943 43.15 MCGIALVVSGIPFDFSSLLLDSIYPPSNSDHHKPEFSIDDLKAALRRRGPDSLGSAKVRIFLSKTSSSSDETEVKSVIEWEEDVRAASYCKEEYGMNNNGSCIASLGRSLLTSVAELYLIGATLQLRGINPITQPLLDAAENILVYNGEIFGGIYVARDCNDTETLLQSLGKCCSCVSSFHERNCFVDGKRQSTVPEVFSMIKGPWSVIYWQDSTKTLWFGRDAFGRRSLLVHWPTLEDSRFLLSSVSSALSVVQATGFEAETGSREFSFWEELPCGIYSLSFETKNSICCLTGEIRKHELTNDELKALIKWERINVVPAPEVTCFPENEISLGPCNINSVSSTKLLSGAGSWLRQPSVSRWAETVLAALKESVMRRSSLHTVFQGVSSDSIMGNVGPVAVLFSGGLDSMILAALLDQCLDCCFDIDLLNVSFDGPFAPDRISARDGMKELRRISPLRRALSQILNFLIMEILKLWKLVEIDADLENLMFETKHVMSLINPSNTYMDMNIGIALWLASGGDGWIYDGSGYDDYNSRLKYKSGARILLVGSGADEQCAGYGRHRTKYRHGSWVGLHEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRTLLDIPLWEIAELDKPSGTGDKKILREMKTLKFKQTRALFPFKPAVKPTATANLLCVVFNSKQIYLLPFILRLPNCLVYMKQQFYQKERFSVGNLFEVMAYSGDSKKREVRIHESLDELSTDLADHIAELSEDSVKERGVFSIALSGGSLISLMGKLTQVPYKTTVDWSKWYVFWADERVVSKSHSDSNYKLAKDGLLSKVPIVPSHVHSINDSVSAEEAAYEYEFMIRQLVKSRTVNVSDVSDCPKFDLILLGMGEDGHIASLFPGHSILDLEEEWVTFITDSPKPPPERITLTLPVINSASNVAIVVTGKSKAETVHLAVDDDMGSDCSIHLPARMVQPRTGKLVWFLDKQAASKLDSYEFSD 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32516010 32527215 + BLOR17512 Blo06g00929 62222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00929 980 Pfam Glutamine amidotransferase domain 133 251 IPR017932 -
Blo06g00929 980 CDD Asn_Synthase_B_C 397 642 IPR001962 GO:0004066|GO:0006529
Blo06g00929 980 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 26 266 IPR029055 -
Blo06g00929 980 SUPERFAMILY NagB/RpiA/CoA transferase-like 724 974 IPR037171 -
Blo06g00929 980 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 285 IPR017932 -
Blo06g00929 980 CDD 6PGL 732 965 IPR005900 GO:0005975|GO:0006098|GO:0017057
Blo06g00929 980 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 40 261 IPR029055 -
Blo06g00929 980 TIGRFAM pgl: 6-phosphogluconolactonase 727 973 IPR005900 GO:0005975|GO:0006098|GO:0017057
Blo06g00929 980 Gene3D HUPs 355 662 IPR014729 -
Blo06g00929 980 Pfam Asparagine synthase 542 643 IPR001962 GO:0004066|GO:0006529
Blo06g00929 980 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 648 - -
Blo06g00929 980 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 731 963 IPR006148 GO:0005975
Blo06g00929 980 Gene3D - 720 975 - -
Blo06g00929 980 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 361 643 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00929 - - - qlo:115979071 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00320 Blo-Chr7:4067219 Blo06g00929 Blo-Chr6:32516010 4.42E-87 transposed
Blo11g00795 Blo-Chr11:12154674 Blo06g00929 Blo-Chr6:32516010 2.23E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g30 . . . . . Bpe10g00901 . Bma15g00130 Cmo04g01790 . . . . . Sed06g1781 . Cpe01g01509 Bhi07g01483 Tan04g0990 Cmetu10g1518 Lac13g0381 Hepe10g1800 . . Cla05g02389 . . Cco05g2636 Clacu05g2563 Cmu05g2420 Cre05g2537 Cone13ag0903 Cone19ag0900 . . Lsi04g00360 Csa05g02517 Chy10g01061 Cme10g00354 Blo06g00929 . . . . . . . . . . Cma04g01705 . Car04g01740 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007690 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00929 Blo_Chr06 FPKM 0.903414 1.164913 0.997894 1.020345 3.291497 3.579903 3.202954 2.389898 2.977837 2.022984