Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00941 ATGGGAAGAGGTAGGGTTCAGTTGAAGAGGATAGAGAACAAGATCAATCGACAGGTTACGTTTTCCAAAAGGAGAAGTGGGTTGCTTAAAAAGGCTCATGAGATCTCGGTTTTATGCGATGCTGATGTTGCTCTGATTGTTTTCTCCAACAAAGGGAAGCTTTTTGAGTACACTACTGATTCTTGCATGGAGAAAATACTTGAGCGGTACGAGAGATACTCCTATGCTGAAAGACAGCTACTTTCATCAGAAACTAAGTTGCAGGTCAACTGCACTTTTGAGTATTCCAGGCTCAAAGCCAAGATTGAGCTTATGCAGAGAAGCTACAGGTACTATGTTGGAGAAGATTTGGAGTCTTTGGGTCTGAAAGGCCTTCAAAGCTTAGAGCAGGAGCTTGATACTTCTCTCAAACAAATTCGAACCAGAAAAAACCAACTCATGCATGAATCAATCTCTGCACTCCAAAAAAAGATCGAGGGTTTGGCAGAGAAGGGTGGAGAGTGGAACCTCCACAACCATGGCGTCGAGGGCTCTTCTTTCTTACGGTCTCTTCCTCTTCCCTGTTCAAACATTGGACAGCAAAACCCTGAAGAATCCGCAGCAGAAGTGGGAGGGAACGAGCTTCATCTAGCTCTAGAGTCAGTCTATCCATGCCGCCACCTTGGACGCTTTGCTGCATAA 681 44.93 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLFEYTTDSCMEKILERYERYSYAERQLLSSETKLQVNCTFEYSRLKAKIELMQRSYRYYVGEDLESLGLKGLQSLEQELDTSLKQIRTRKNQLMHESISALQKKIEGLAEKGGEWNLHNHGVEGSSFLRSLPLPCSNIGQQNPEESAAEVGGNELHLALESVYPCRHLGRFAA 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32637827 32641297 - BLOR17524 Blo06g00941 62234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00941 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo06g00941 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 164 - -
Blo06g00941 226 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 164 - -
Blo06g00941 226 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Blo06g00941 226 Pfam K-box region 85 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo06g00941 226 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Blo06g00941 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo06g00941 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo06g00941 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo06g00941 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo06g00941 226 ProSiteProfiles K-box domain profile. 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo06g00941 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo06g00941 226 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Blo06g00941 226 Coils Coil 125 145 - -
Blo06g00941 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00461 Blo-Chr1:5098214 Blo06g00941 Blo-Chr6:32637827 4.48E-80 dispersed
Blo06g00941 Blo-Chr6:32637827 Blo07g00016 Blo-Chr7:341868 1.96E-54 dispersed
Blo14g00437 Blo-Chr14:5080090 Blo06g00941 Blo-Chr6:32637827 2.85E-27 dispersed
Blo11g00805 Blo-Chr11:12765549 Blo06g00941 Blo-Chr6:32637827 1.81E-109 wgd
Blo16g01080 Blo-Chr16:39355703 Blo06g00941 Blo-Chr6:32637827 2.81E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12516 PF01486 K-box 2.70E-22 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00941 K09264 - qsu:112022353 295.049