Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00965 ATGGAACAGTTGCCGCCTGTATTGGCTACAATGATACCTGGGGAAAAAAGTTCTAAAGGATTAGCATTTGGACCACTTGATGGAACAGTTGCCATCTATATTGACTACAATGATACCTGGGGAAAGAGGTCTAAAGGATTAGCATATGGAACACTTGATGGAGCAGTTGCCGCCTCCAACCTTCTTGCCATTTCAGTCTTGTCAAGATCAGATTATTTAACAATGGCCTCCCCCTTCTTCTCAAAGGTTTCCATCTCCAAAATTCCAGTCGTCCGATGCAAAATACTGGAGATCTTCATGCCCACCCTCAAATCCGAGGAAAGGGAAAAATTGTTGGAGAAGATCCTTAATTTGAGCTGCAAAGATGGGAAGAGTTTTACATTCAATATTAATATAAATATTGCAGTGGCTGTGGCTATTAATGGTGGATTGATTACTCATAAAGAACTCGTGGAGAAAGCTCGAGCTAAGCAACTTCAACCCGATGAGTATAACTCAGGTACATTTACTCTTTCTAATCTGGGCATGTTTAGAGTGGATAGGTTCGATGCTATTTTTCCACCTGGTCAGGTGACTATCATGGCAGTGGGAGCATCAAAGCAGACTTTTCAAGCCGTTGATGGATTCTTCAGTGTGAAAACTAAAATGCTTGTGAGTTGA 660 41.52 MEQLPPVLATMIPGEKSSKGLAFGPLDGTVAIYIDYNDTWGKRSKGLAYGTLDGAVAASNLLAISVLSRSDYLTMASPFFSKVSISKIPVVRCKILEIFMPTLKSEEREKLLEKILNLSCKDGKSFTFNININIAVAVAINGGLITHKELVEKARAKQLQPDEYNSGTFTLSNLGMFRVDRFDAIFPPGQVTIMAVGASKQTFQAVDGFFSVKTKMLVS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32918926 32920658 - BLOR17548 Blo06g00965 62258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00965 219 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 115 218 - -
Blo06g00965 219 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 115 218 IPR045257 GO:0006086|GO:0045254
Blo06g00965 219 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 148 217 IPR001078 GO:0016746
Blo06g00965 219 Gene3D - 146 219 IPR023213 -
Blo06g00965 219 SUPERFAMILY CoA-dependent acyltransferases 116 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00965 K00627 DLAT, aceF, pdhC; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] - tcc:18610503 150.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00965 Blo11g00837 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00965 Blo-Chr6:32918926 Blo12g00763 Blo-Chr12:25976649 3.39E-39 dispersed
Blo11g00837 Blo-Chr11:14346138 Blo06g00965 Blo-Chr6:32918926 5.66E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g296 . . . . . . Bma14g01705 . . Cmo18g01040 . . . Car18g00950 Sed07g2078 Cpe09g00293 . Bhi07g01336 Tan04g0870 Cmetu10g0862 Lac13g0484 Hepe01g1202 . . Cla05g02309 Cam05g2482 Cec05g2505 Cco05g2547 Clacu05g2477 Cmu05g2338 Cre05g2456 . . . . Lsi04g00264 Csa05g02602 Chy10g01137 Cme10g00270 Blo06g00965 Blo11g00837 Bda07g01532 . Bpe11g01697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033633 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00965 Blo_Chr06 FPKM 3.868621 3.017145 5.170211 4.994213 2.238343 2.751237 2.767672 6.452256 7.501352 7.435226