Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00966 ATGGGGAGGAAACTCGACGCTTTGTTCGGGAAGCGAAGCTTCAACGCCTCTAAGCTTCGAGTTCTTCTTAATCTCTCTCTTTCTCGTCTCTCTGTTCTCAAGAAGCAACGCCAGGCTCGGTGCTCGCAAGCTCGTACTGACGTTCTTCAGATTCTTCAACTCGGCAACCATGAACGTGCTCTCCTCCGCGTTGAGCAAGTGGTGAAGGAGCAGAATCTACTGGATGTGTATGTCATGATTGAGAGCTATTGCAATCTTTTGATAGAAAGAGTTGACCTTCTTCAAAAACAAAGAGAGTGTCCTGATGAGCTGAAGGAGGCAATCTCAGGCCTCTTATTTGCATCTTCAAGATGTGGAGATTTTCCAGAACTTCTACAAATCAGAACGGCACTCGCCTCCCATTTTGGCAAGGAATTCGTTGCTCGGGCTGTCGAGTTAAGGAACAACTGCGGCGTCAATCTTACAATGATTCAAAAGCTATCAACCAGGCAGCAGGACTTGGAAATGAGGATGAAGATTTTAAAAGAGATTGCTTCCGAGAATAGCATTTTTTTACAACTAGAAGAGGAGTCTCCACGCGGGACTGGCCAAAACGCTGAAGAAGCGAACGGCGGTTCAAAACCTTTATCTGAAATAACAGCAAGTGAGGAAGGATCTTCTGGATCGATGAAACCAAGAAAGAAGTATAAGGACGTAGCCGATGCAGCTCAGGCAGCTTTTGAGTCGGCGGCATACGCAGCAGAGGCTGCACGAGCGGCTGTCGAGCTCTCTCGATCGGAATCTCAAGACCCCGATGAAGCAATGACTGTTAAAGTGAAACGAAACGAAAATTCAGGAGAATTGAAGTCGTTTAAGTCAGATTCTGAAGATGGAATGAAGACGAGTAATATGTCGACGAACGGAGAAAGCGATTCCGATGACAGCGACGATAACTCCGGCAATGAACAAGAGAGTATTCCGACGCCTAAGCAGGTTCCTACAAGTTTTCAATCTGATATGGAGCCAAAAGCAGGGCTGGGGAGGAATCCATTGCCAACATCTGTAAGAACCAGAGGAGTCAGAGGGTTGGAGTTGTTTTTACTAGGGGTGGGCAAATTGGTTCTCGATTCTGGTTTCGGACTTCTTGGAACTGATCGTTCGGTTCTTGGTTCCAAGAATGAGCCACTGTATCCAATAGCTCTCCTCATAGACGAGCTGAAAAATGATGATATCCAGCTGAGGCTGAACTCGATTCGTAGGCTTTCTACAATTGCACGTGCTTTAGGAGAGGAACGAACCCGGAAAGAATTGATTCCATTTTTAAGTGAAAACAATGACGATGATGATGAGGTGCTTCTTGCAATGGCAGAGGAGTTGGGAGTGTTTACTCCATATGTAGGGGGAGTGGAGTATTCTTGTATTTTGCTCCCGCCTTTGGAAACCCTTTGCACTGTTGAGGAAACATGCGTTAGAGATAAATCTGTGGAGTCTTTGTGCAAAATTGGATCTCAGATGAGGGAAAGTGATTTGGTGGACTGGTTCATTCCTCTTGTTAAGAGATTGGCTGCTGGTGAATGGTTTACAGCTAGAGTTGCTGCATGTGGGCTGTTTCATATTGCGTACCCTAGTGCTCCAGAGATGTTAAAGACAGAGTTGCGATCATTATATCGCCAATTGTGTCAAGATGACATGCCAATGGTTAGGAGATCTGCCGCAATGAGTTTGGGGAAATTCGCTGCAACTGTTGAACCTACTCATCTGAAGATTGAGATCATGTCAATCTTTGAAGACCTTACTCAGGATGATCAAGATTCTGTTCGATTATTGGCTGTTGAAGGTTGTGCCTTGCTTGGGAACTTGTTGGAGCCTCAAGATTGTGTTTTGCATATACTTCCTGTGATAGTTAGCTTCTCTCAGCCCCCTTGTGAAATATCTTTTTTCCTTGATTTTTTCTTGCAGGACAAGTCTTGGCGTGTTCGTTACATGGTTGCTAATCAATTGTATGAACTTTGTGAATCTGTGGGACCTGAGCCCACCAGGACTGACTTGGTGCCGTCATATGTTCACTTGCTTCGGGACAATGAGGCTGAGGTTCGAATAGCAGCGGCTGGCAAAGTAACCAAATTTTGCAGGATATTAAATCCAGAATTGGCAATTAAACACATTCTTCCTTGTGTGAAGGAACTGTCATCAGATTCCTCGCAGCATGTTCGGTCTGCTTTAGCTTCAGTTATAATGGGAATGGCCCCTGTATTAGGAAAGGACGCAACAATCGAGCTGCTCCTTCCAATTTTTCTCTCCCTTTTGAAGGATGAATTTCCTGATGTACGGTTGAATATCATTAGCAAGCTCGATCAAGTAAATCAGGTCATTGGAATTGATCTCCTATCGCAATCATTGTTACCCGCCATAGTTGAGCTTGCTGAGGATAAACATTGGCGAGTTCGGCTTGCAATAATAGAATATATTCCTTTGCTGGCTAGCCAGTTGGGTGTTGGGTTTTTTGATGATAAGCTCGGTGCCCTTTGCATGCAATGGTTGCAGGATAAGGTTTACTCAATTCGTGATGCAGCTGCAAACAACTTAAAGCGGCTAGCAGAAGAATTTGGTCCTGATTGGGCAATGCAGCACATTATCCCACAGGTTATTGAGATGACTAATGATCCCCACTATCTGTATCGAATGACCATTCTCCGTGCGATCTCTCTTCTTGCCCCAGTAATGGGTTCGGAAATCACCTGTTCAAAGCTACTCCCTGTGGTTGTCAATTGTTCCAAAGACAGAGTTCCAAACATTAAGTTTAACGTAGCTAAGGTGCTCCAGTCCCTAATTCCCATCGTCCACCATCCTGTGGCCGAGAGGACAATCCGACCCTGCCTGGTTGAACTCAGTGAGGACCCAGATGCAGATGTCCGTTTTTTCGCCAACCAAGCGCTCCAGGCTATTGACAATGTCATGATGTCTAGCTAG 2949 45.27 MGRKLDALFGKRSFNASKLRVLLNLSLSRLSVLKKQRQARCSQARTDVLQILQLGNHERALLRVEQVVKEQNLLDVYVMIESYCNLLIERVDLLQKQRECPDELKEAISGLLFASSRCGDFPELLQIRTALASHFGKEFVARAVELRNNCGVNLTMIQKLSTRQQDLEMRMKILKEIASENSIFLQLEEESPRGTGQNAEEANGGSKPLSEITASEEGSSGSMKPRKKYKDVADAAQAAFESAAYAAEAARAAVELSRSESQDPDEAMTVKVKRNENSGELKSFKSDSEDGMKTSNMSTNGESDSDDSDDNSGNEQESIPTPKQVPTSFQSDMEPKAGLGRNPLPTSVRTRGVRGLELFLLGVGKLVLDSGFGLLGTDRSVLGSKNEPLYPIALLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFTPYVGGVEYSCILLPPLETLCTVEETCVRDKSVESLCKIGSQMRESDLVDWFIPLVKRLAAGEWFTARVAACGLFHIAYPSAPEMLKTELRSLYRQLCQDDMPMVRRSAAMSLGKFAATVEPTHLKIEIMSIFEDLTQDDQDSVRLLAVEGCALLGNLLEPQDCVLHILPVIVSFSQPPCEISFFLDFFLQDKSWRVRYMVANQLYELCESVGPEPTRTDLVPSYVHLLRDNEAEVRIAAAGKVTKFCRILNPELAIKHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIELLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDKHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPDWAMQHIIPQVIEMTNDPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVVNCSKDRVPNIKFNVAKVLQSLIPIVHHPVAERTIRPCLVELSEDPDADVRFFANQALQAIDNVMMSS 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32930464 32941152 + BLOR17549 Blo06g00966 62259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 715 753 IPR021133 -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 584 622 IPR021133 -
Blo06g00966 982 MobiDBLite consensus disorder prediction 190 226 - -
Blo06g00966 982 MobiDBLite consensus disorder prediction 256 347 - -
Blo06g00966 982 SUPERFAMILY ARM repeat 385 975 IPR016024 -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 754 792 IPR021133 -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 949 982 IPR021133 -
Blo06g00966 982 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 386 982 - -
Blo06g00966 982 Gene3D - 383 978 IPR011989 -
Blo06g00966 982 Pfam HEAT repeats 756 856 - -
Blo06g00966 982 Pfam Regulator of Vps4 activity in the MVB pathway 21 183 IPR005061 GO:0015031
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 910 948 IPR021133 -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 832 870 IPR021133 -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 545 583 IPR021133 -
Blo06g00966 982 MobiDBLite consensus disorder prediction 258 289 - -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 676 714 IPR021133 -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 623 675 IPR021133 -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 391 429 IPR021133 -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 871 909 IPR021133 -
Blo06g00966 982 MobiDBLite consensus disorder prediction 190 220 - -
Blo06g00966 982 Gene3D - 8 193 IPR042277 -
Blo06g00966 982 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 386 982 - -
Blo06g00966 982 ProSiteProfiles HEAT repeat profile. 793 831 IPR021133 -
Blo06g00966 982 MobiDBLite consensus disorder prediction 314 331 - -
Blo06g00966 982 Coils Coil 157 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00966 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A - csv:101222376 1051.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00966 Blo-Chr6:32930464 Blo08g00334 Blo-Chr8:5019486 5.39E-34 dispersed
Blo10g00771 Blo-Chr10:24006223 Blo06g00966 Blo-Chr6:32930464 1.71E-17 transposed
Blo11g00833 Blo-Chr11:14235269 Blo06g00966 Blo-Chr6:32930464 0 transposed
Blo01g00499 Blo-Chr1:5536823 Blo06g00966 Blo-Chr6:32930464 1.88E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003579 2 5 2 2 2 1 2 1 1 0 1 1 1 1 1 2 1 4 2 1 1 2 1 1 0 1 1 2 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00966 Blo_Chr06 FPKM 0.567748 0.815276 0.601741 0.491933 1.170059 1.704256 1.073662 0.809961 0.751261 0.63969