Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g00995 ATGGTCGGAACTAGTCCTGAGGCTGCTTGTGTTCGGGGGAGAGTGATGTCGAATGTGGGCGGGGTCGGGAGCAAGAAGAGGAGGAGCGAGAGGGTTTATAAGTTCAAGAGGTTTGGCGAGAATGGGTATCCGGCTGAGTTAGTGGGTGGATCGTTTAGAGAGAATGTGAAGGCTCTGGTTGAATATGGGCATTTGGAGAGTGAGTTCTGGAGGGGATTGAGAAGTTGGTCTTTTCAGCTGGAAGTGAATAGACATCCTCCTTTTCATCTTCTTCTCTTTGTTGTTGAGGAACCCATTGAAGCTTCCCCCAATCTCCATTGTAAGCCATGCCAATTTGTAGGCTGGGGGCATCATATGATCTGCAACAAGAAGTACCATTTTCTGTTGCCCTCCAAAGACACCTTATTGGCTGCATGCTTTGGCAACAATGGAGGAGATAATTGGTGGGGAAAGGTTGCAGATTTAGGCGGCCACATCTTGCATGGCGTCTTCCACTCCAATGGCTTCGGCCATCTGCTCTCCCTTAATGGTTTCGAAGCTGGCTCTGACCTCCCCGGCCATTCTGTAATGGATTTGTGGGATCGTCTCTGTACTGGACTCCGGGCAAGGAAAGTGAGTTTGAAAGACGTTTCGGAGAAGAAAGGGATGGAACTGAGGCTTGTTTATGGAGTTGCAGAGGGGCAGCCATGGTTTCACCGCTGGGGCTACTCGTTTGGCAGAGGGACCTTCTGCGTCACCCCGGAAATGTACGAGAAAGCCATTGAAGCCATTAGAACTATTCCCCTAACCTTCCTTCTTCCTCATCTCCACTTCGTCTTCTCCAAATACCAAGCACTTTCCGAAAACTCCATAGCCAACCTCGGCGACCTCTTCCACTTCCTCCTCCAACTCAAATCGAGGATTCCCACCCAAAATTCTGCCGATTCATTTTCAAATCAGATTGGAATTCTTACCGAGAATTCCTGCCGGTGGTCACCCAAGAGAGTGGAAATGGCAGTCAGAGTGATCGTGGAATCGTTGAAACAAGCCGAATTCCGGTGGGTTTCCCGGCAAGAAGTTAGAGATTCTGCCCGTGTTTACATCGGCGATACTGGTCTGCTTGATTTCGTGTTGAAATCGTTAGGAAATCACGTGGTCGGAAAATATCTTGTTCGCCGGAGCTTAAATCCGGTCACTAAAGTTCTTGAATATTGCTTGCAAGACATTTCGAATCCGTTTCCCAATCAAGAATGTGGATTATTTCTTCCAAATTCAAAAGGAAAAACGCGAACCGAGATGATAAATCGAGCTCAGATAACCAAAGACATGGTTTGTCTCTACAAAGCCATCTTCTCCGACCAGACAAACACTCCGATTTCTTCAGCTATATCAATGGCCGCCAGAATAATCCTCGATTCAAAATACCTTACAAAGGATTACGAACATGGGTTCGATGCCGGAAAACGGCATCTCTTCTGCACCGTGGAGCTCAAGGAATCCATCACGCCGCCTCCATACGAGAGTTTCACGCTGAAAACAGGTTCCACCATTGATGAACTCAAGCGAGAAGTGGAAAAAACTTTCAGAGAATTATACTACGGACTGAGGACCTTCCAAGTGGAATCAATCGTCAATTTGAACGCAAATGGGTCAGACGCAGTATTGAATATGGTGGAACACGGACGAAAATTGGTTTTTGAGGGAAGCGATAGAGAGAGAAAGAGAATGGAGGAGATATATGAATATGGCGATATGCAGACGAAGGTGGTGGATTGCAGGTGTGGAGCTGAGGAAGACGATGGAGAGCGCATGATTTGCTGTGATATTTGCGAGGCGTGGCAACACAGTCGATGCGTTCATATTCCAGACGATGAAGAAATTCCCACCATTTTTCTCTGCAATCGATGCGACACAGAAATCCTGCTCCTTCCTTCTCTACCATGA 1923 47.32 MVGTSPEAACVRGRVMSNVGGVGSKKRRSERVYKFKRFGENGYPAELVGGSFRENVKALVEYGHLESEFWRGLRSWSFQLEVNRHPPFHLLLFVVEEPIEASPNLHCKPCQFVGWGHHMICNKKYHFLLPSKDTLLAACFGNNGGDNWWGKVADLGGHILHGVFHSNGFGHLLSLNGFEAGSDLPGHSVMDLWDRLCTGLRARKVSLKDVSEKKGMELRLVYGVAEGQPWFHRWGYSFGRGTFCVTPEMYEKAIEAIRTIPLTFLLPHLHFVFSKYQALSENSIANLGDLFHFLLQLKSRIPTQNSADSFSNQIGILTENSCRWSPKRVEMAVRVIVESLKQAEFRWVSRQEVRDSARVYIGDTGLLDFVLKSLGNHVVGKYLVRRSLNPVTKVLEYCLQDISNPFPNQECGLFLPNSKGKTRTEMINRAQITKDMVCLYKAIFSDQTNTPISSAISMAARIILDSKYLTKDYEHGFDAGKRHLFCTVELKESITPPPYESFTLKTGSTIDELKREVEKTFRELYYGLRTFQVESIVNLNANGSDAVLNMVEHGRKLVFEGSDRERKRMEEIYEYGDMQTKVVDCRCGAEEDDGERMICCDICEAWQHSRCVHIPDDEEIPTIFLCNRCDTEILLLPSLP 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33203332 33205550 - BLOR17578 Blo06g00995 62288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g00995 640 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 23 640 - -
Blo06g00995 640 CDD PHD_MMD1_like 584 629 - -
Blo06g00995 640 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 23 640 - -
Blo06g00995 640 SUPERFAMILY FYVE/PHD zinc finger 571 631 IPR011011 -
Blo06g00995 640 SMART PHD_3 584 630 IPR001965 -
Blo06g00995 640 Pfam PHD-finger 585 631 IPR019787 -
Blo06g00995 640 ProSitePatterns Zinc finger PHD-type signature. 585 629 IPR019786 -
Blo06g00995 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 572 633 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g00995 - - - jre:109005539 785.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00995 Blo-Chr6:33203332 Blo18g00476 Blo-Chr18:5620287 1.56E-124 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo07g01380 . 207 919 PHD Transcription Factor Family AT2G36720 55.4 5.9e-230 794.7
Blo04g00288 BCT 431 557 PHD Transcription Factor Family AT3G53680 55.1 1.5e-37 155.2
Blo12g00329 . 856 1706 PHD Transcription Factor Family AT4G14920 50.7 8.2e-228 787.7
Blo06g00995 . 25 640 PHD Transcription Factor Family AT5G22260 51.4 1.7e-177 619.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009705 1 1 1 0 1 2 1 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12524 PF00628 PHD 2.10E-08 CL0390 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g00995 Blo_Chr06 FPKM 0.054293 0.262194 2.376944 1.975048 2.425281 2.037917 2.248322 1.316783 1.522418 1.891369