Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01004 ATGCATGAATTTCATCCGGTTTGGTTTTTTTCCGGCCTCGGTTCAGTTTGGTCATCATCAGCTGCATCTGCAGTTCCTAGGAATTTCAGATTACTGGAAGAGCTTGAAAGAGGTGAAAAGGGAATTGGAGATGGAACAGTCAGCTATGGAATGGATGATGCTGATGATGTATACATGCAATCTTGGACAGGAACTATCATTGGTCCACCTAATACTGTTCATGAAGGTCGCATCTATCAGTTAAAGCTGTTCTGTGGAAAGGAGTATCCCGATAACCCACCGACTGTCAGATTCCAAACTCAGATAAACATGACCTGTGTCAGTCCAGAAACTGGAGTGGTTGAACCAAAATCATTCCCTATGCTTTCTAATTGGCAAAGGGACTGCACAATGGAGGACATATTGATTCAATTGAAGAAAGAGATGGCATCTCCCCAAAACCGAAAGCTAACTCAGCCTCTTGATGAATGTGATGAAAATGAAATGACTATTCTTCAGAAGCACATCGCATTCTTCGATAGAAATCACGACGGCGTCGTCTACCCATGGGAGACTTTTCAAGGATTTCGAGCGGTAGGATGTGGAATCCTGTTGTCTGTGGCTGGTGGCATTCTCGTAAATATGGCTCTCAGTCATAGTACTCGACCTGGAAAGTTTCCGTCTCTTCTATTCCCCGTTGTGATTAAAAATGCTCAAAAAGCCAAACACAAGAGCGATTCGGGTACATTCAATACCGAAGGAAGGTTTGATCCATCTAAATTCGAGGCGATTTTCACGAAAAATGCGAAAACTCACCCGAATGCATTGACATCGGACGAACTAAGTGGAATGTTGAAGGCAAATAGAGAACGCAAGGACCGAAATGGATGGATTATGAGCTACGCAGAATGGAAGCTTTTGTTTGAGCTTGGGAAAGACAAAGATGGGTTGCTGCAGAAAGAAACCCTCGAGGCTTTCTATGATGGAAGCTTATTTGAGAAATTGGAGAAAGAGAGGTTGTCTTCCAAAGAGAAACCCTAA 1020 43.14 MHEFHPVWFFSGLGSVWSSSAASAVPRNFRLLEELERGEKGIGDGTVSYGMDDADDVYMQSWTGTIIGPPNTVHEGRIYQLKLFCGKEYPDNPPTVRFQTQINMTCVSPETGVVEPKSFPMLSNWQRDCTMEDILIQLKKEMASPQNRKLTQPLDECDENEMTILQKHIAFFDRNHDGVVYPWETFQGFRAVGCGILLSVAGGILVNMALSHSTRPGKFPSLLFPVVIKNAQKAKHKSDSGTFNTEGRFDPSKFEAIFTKNAKTHPNALTSDELSGMLKANRERKDRNGWIMSYAEWKLLFELGKDKDGLLQKETLEAFYDGSLFEKLEKERLSSKEKP 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33269101 33275335 + BLOR17587 Blo06g01004 62297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01004 339 PANTHER INACTIVE PEROXYGENASE-LIKE PROTEIN-RELATED 148 338 - -
Blo06g01004 339 SMART ubc_7 29 195 - -
Blo06g01004 339 Pfam Ubiquitin-conjugating enzyme 56 149 IPR000608 -
Blo06g01004 339 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 26 184 IPR000608 -
Blo06g01004 339 SUPERFAMILY EF-hand 163 319 IPR011992 -
Blo06g01004 339 Pfam Caleosin related protein 161 328 IPR007736 -
Blo06g01004 339 Gene3D Ubiquitin Conjugating Enzyme 12 158 IPR016135 -
Blo06g01004 339 PANTHER PEROXYGENASE 3-RELATED 148 338 IPR007736 -
Blo06g01004 339 SUPERFAMILY UBC-like 24 152 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01004 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant - jre:108980955 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00301 Blo-Chr1:3719938 Blo06g01004 Blo-Chr6:33269101 3.04E-53 dispersed
Blo01g01234 Blo-Chr1:46706183 Blo06g01004 Blo-Chr6:33269101 2.00E-69 dispersed
Blo06g01004 Blo-Chr6:33269101 Blo12g00522 Blo-Chr12:23176283 4.47E-45 dispersed
Blo06g01004 Blo-Chr6:33269101 Blo07g01310 Blo-Chr7:33358912 4.04E-75 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo06g01004 . 158 338 Pollen Coat Proteome AT1G23240 53.0 4.4e-53 204.9
Blo06g01004 . 158 338 Pollen Coat Proteome AT1G23240 53.0 4.4e-53 204.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000459 4 2 3 5 4 3 6 2 3 2 3 3 6 2 3 5 3 7 6 3 3 3 3 3 2 2 2 18 4 3 118