Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01023 ATGGCCGGTGGAGTCGCCGGCGACGGACAGAGTACTCCCGGAGTTGTCTTGCTTAATCTCGTGCGAGACGTTATCTGTACGTCGGCGGGGAATACCACGGGCGACTTATTCAAGAAGGACTGTACCGATCTGGTGCGTCGGATTGCTCTCTTGAGTCACTTGTTTGAAGAGATTAGGGATTTGAAGACGGCTAATGCATTTGGAGCTGCCGATGCATCGACGTCGTTGCCTTCTTCTTCGAAAATGGCGACGGGTAGTGAGTTCTCCTCCTGGCTGTCCGATCTGGTTTTAGCTCTGAAGGCCGCTAAGCGTCTACTTTTCGTCGCTCGTACTTTCAACTCCGGCAATAGCTCTTCGGATGAAGCTGCCCAGAAAATAGAATTCCAGTTCAAATATGTTACTTGGAAGTTAGAGAAAGCTTTGGGAAATCTACCATTTGATCGATGTGATATCTCAGAGGAAGTTCAAGAACAGGTTGAGTTGGTAAGAGCACAGTTGAGAAGAGCAGCCAACAAGTATGGATCGTCAGCTTCAATTACACCATCAGTTCTCTCCCAGTTGCTGGATAGAGAAATAGGCATTTTATTGTCTGACCAGTGGTTGAATGGTATTCCTTTCGAGAATTCTGGTAGTACAGATGATGATGATGATGCTACTGTGAAGATGGACGCTTTTGTTAACACTGATAGCTTGGTCTGCCATAGCAAGGAACAGAGAACTCGATTATTGGAAAAAATCAAGAATACTTCTACTTCTCAAGTCTCTCCAAACGATGCTAGTGCTGAAGCGCATGGAAATTCGGCAAAAGAGGGTGTCGATGAGAACAAGAAATCTGATGCAATTATTATTCCGGATGATTTTTTATGCCCCATATCTCTGGAATTAATGAGGGACCCTGTTATTGTGGCCACGGGACAGACGTATGAAAGATCCTACATTCAAAGATGGGTAGATTGCGGCAACATGACATGTCCGAAAACTCAACAGAAGCTTCAAAATTTAACCCTTACACCAAATTACGTTTTGAGAAGTCTCATCTCGCAGTGGTGTCTCAAGCACAACATTGAACAACCGACCGGATTAACCAACGGAAAAATGAAAAATTTTGACGGAACGTATCGTGACGTTTGCGAAGAAATAGCAGCCATCGAAGCGTTGGTTCACAAACTGTCCTGCCATTGCATTGAGGAGCAAAGAGCAGCTGTAACTGAACTCCGAGCCCTATCCAAAAGAAGTACAGATAACAGAATACTGATAGCAGAAGCAGGAGCCATTCCAGCTTTGGTCAAACTTTTGTTGACGGAAGACCCAGAAACACAAGAGAACGCAGTCACTTCCATTCTCAACCTTTCGATATACGAAAACAACAAAGGACTCATTATGCTAGCTGGAGCCGTCCCGTCGATTGTTCAGGTCCTTCAAATCGGAAGCATGGAGGCTAGAGAAAATGCAGCGGCTACCCTCTTTAGCCTCTCACTTGCAGATGAAAACAGGATCGTAATTGGCGCATCTGGGGCAATCCCAGCATTGGTTGAATTGCTGCAAAATGGGAGAACTAGAGGGAAAAAAGATGCAGCCACTGCACTCTTCAATTTATGCATTTATCAGGGAAACAAAGGCCGAGCTGTGAGGGCCGGGATCATCCCGGCTCTACTGAAGATGCTTACGGATCCAAGTTCATGCATGGTAGACGAGGCCCTCACCATAATGTCGGTTCTGGCCGACCATCAAGAGGCGAAAGCTGCCATCGTAAAAGCTAGCACCATACCCGTTTTGATAGACATTGCGAGGACGAGTTTGCCTCGGAACACTGAAAATGCGGCTGCCATTTTACTTGCATTATGTAAGAGAGATTCAGAAAATCTTGCCTGTATAAGTAGACTCGGAGCCGTTATACCATTGACTGAGCTTGCAAAGAGTGGCACAGAAAGAGCAAAACGGAAAGCGACTTCATTGCTGGAGCATCTTCGGAAGTTGCAGGAGCATTAG 1989 45.9 MAGGVAGDGQSTPGVVLLNLVRDVICTSAGNTTGDLFKKDCTDLVRRIALLSHLFEEIRDLKTANAFGAADASTSLPSSSKMATGSEFSSWLSDLVLALKAAKRLLFVARTFNSGNSSSDEAAQKIEFQFKYVTWKLEKALGNLPFDRCDISEEVQEQVELVRAQLRRAANKYGSSASITPSVLSQLLDREIGILLSDQWLNGIPFENSGSTDDDDDATVKMDAFVNTDSLVCHSKEQRTRLLEKIKNTSTSQVSPNDASAEAHGNSAKEGVDENKKSDAIIIPDDFLCPISLELMRDPVIVATGQTYERSYIQRWVDCGNMTCPKTQQKLQNLTLTPNYVLRSLISQWCLKHNIEQPTGLTNGKMKNFDGTYRDVCEEIAAIEALVHKLSCHCIEEQRAAVTELRALSKRSTDNRILIAEAGAIPALVKLLLTEDPETQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLQIGSMEARENAAATLFSLSLADENRIVIGASGAIPALVELLQNGRTRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDPSSCMVDEALTIMSVLADHQEAKAAIVKASTIPVLIDIARTSLPRNTENAAAILLALCKRDSENLACISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQEH 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33512538 33515209 - BLOR17606 Blo06g01023 62316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01023 662 Gene3D - 366 463 IPR011989 -
Blo06g01023 662 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Blo06g01023 662 SUPERFAMILY ARM repeat 376 656 IPR016024 -
Blo06g01023 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Blo06g01023 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Blo06g01023 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 505 547 IPR000225 GO:0005515
Blo06g01023 662 PANTHER U BOX DOMAIN-CONTAINING 19 659 - -
Blo06g01023 662 SMART arm_5 576 616 IPR000225 GO:0005515
Blo06g01023 662 SMART arm_5 494 534 IPR000225 GO:0005515
Blo06g01023 662 SMART arm_5 618 658 IPR000225 GO:0005515
Blo06g01023 662 SMART arm_5 535 575 IPR000225 GO:0005515
Blo06g01023 662 SMART arm_5 453 493 IPR000225 GO:0005515
Blo06g01023 662 SMART arm_5 412 452 IPR000225 GO:0005515
Blo06g01023 662 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Blo06g01023 662 CDD RING-Ubox_PUB 287 329 IPR045210 -
Blo06g01023 662 MobiDBLite consensus disorder prediction 245 275 - -
Blo06g01023 662 Gene3D - 561 662 IPR011989 -
Blo06g01023 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 588 IPR000225 GO:0005515
Blo06g01023 662 Coils Coil 152 172 - -
Blo06g01023 662 MobiDBLite consensus disorder prediction 245 262 - -
Blo06g01023 662 Gene3D - 464 560 IPR011989 -
Blo06g01023 662 Pfam U-box domain 283 354 IPR003613 GO:0004842|GO:0016567
Blo06g01023 662 Pfam Armadillo/beta-catenin-like repeat 413 451 IPR000225 GO:0005515
Blo06g01023 662 Pfam Armadillo/beta-catenin-like repeat 495 533 IPR000225 GO:0005515
Blo06g01023 662 SUPERFAMILY RING/U-box 278 357 - -
Blo06g01023 662 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 19 659 - -
Blo06g01023 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 357 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo06g01023 Blo11g00735 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01023 Blo-Chr6:33512538 Blo14g00121 Blo-Chr14:881191 3.84E-152 dispersed
Blo03g01352 Blo-Chr3:39944691 Blo06g01023 Blo-Chr6:33512538 1.52E-13 transposed
Blo11g00735 Blo-Chr11:9692416 Blo06g01023 Blo-Chr6:33512538 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01023 - - csv:101221534 889.412