Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01028 ATGTCATGGGAAGAAGAGATTGTGATGCGCGATGTCACCAATGCTGGGCTTGTAATTAGCGATCGGATTGGTCGAGAAGTTACATCTCAGCTTGATTTGGAAGAAGCCCTAGAGGCTTCGAGATACTCAAGCCATCCTTATTCCACTCATCCAAGAGAGTTGCCTCCTTTGGTCGAAGTAGTGGATACGTGGGAGTTGCCTACAGTGCTCATTGAGCGATATAATGCATCTGGTGGTGAGGGAACTGCCTTGTGTGGAATATTTCCAGAAATTCGTAGGGCATGGGCTTCAGTGGATAACTCTTTATATCTTTGGCGCTTTGACAAGTGCGATGATCAGTGTCCTGAGTACAGTGCAGAGGAGCAAGCTATTTGTGCTGTGGGCCTTGCCAGATCAAAGCTTGGTGTTTTTGTTGAAGCAATACAGCATCTTTTAATATTAGCCACACCAGTGGAGTTGATTCTTGTTGGAGTATGTTGCTCTACTGGTGGTAGTGGTATGGACCCTTATGCAGAGATTTCACTGCAGCCATTACCTGAGTACACCATACCATCAGATGGTGTCACCATGACTTGTGTCACCTGCACTGACATGGGTCGTATTTTTCTGGCGGGGCGTGATGGTCACATTTATGAACTACTCTACACATCTAGTTCAGGTTGGCAGAAGCGCTGTCGTAAAGTTTGTCTTACTGCTGGTTTAGGAAGTGCAATATCTAGGTGGGTGGTCCCTAACGTATTTAAATTTGGACATGTTGATCCTATTGTGGAAATGGTTTTTGACAATGAAAGATGTATTTTATATGCTCGAACTGAGGAGATGAAACTTCAAGTTTTTGTTTTGGGGTCAAATGGTGATGGTCCACTGAAGAAAGTGGCAGAAGAAAGGAATTTGGTCAATCATAAGGACGAGCATTATGGAAGTAGACAGTCAGCTGGAGCAAGATCTGCAAGTCATTCTGGAAAGGCCTCTATTATTAGCATTTCACCTTTATCTACACTTGAATCAAAGTCACTACATCTTGTTGCTATTTTATCAGATGGCAGAAGGATGTACTTAACCACTTCTCCATCTAATGGAAATATAAGTGGATTTGAATTGAGCCATCACAAGCCAAGCTGTTTAAAAGTCGTGGCAACCAGGCCTTCTCCTCCTCTTGGAGTTGGTGGGGGTCTTACATTTGCTGGTAGACATCAGAATGAGGACCTTTCATTGAAGGTTGAGACAGGATTTTATTCTTCTGGGACTCTTATCCTTGCAGACTCATCACCCCCAACCATCTCATCTCTCTTAATTGTAAGTCGGGATTCAGGGATGCAATCTTCGGTATCAAGCACTTTAACAACAAGGAGTTCCCGTGCATTAAGGGAATCTGTATCCACCCTTCCTCTTGATGGCCGAATGCTATATGTGGCAGACATTCAGCCATCACCAGATATTGCAGTTTCTGTACAGTCTATATATTCAGCAATTGAATATGGTGGGATTGGAATTTCAGATGGGTCATGTGGAAAAGCAATTGGAAAATTTTGGGCAAGAGGTGATCTCTCTAACCAGCATATTTTCCCAAGGCGGAGAGTAATTGTATTCAGTACCATGGGTATGATGGAAGTAGTCTTCAATAGACCTGTGGACTTATTGAGGAAGCTGTTAGAGTCTAATTCACCAAGATCAAACTTGGAAGATTTTTTCAATCGTTTTGGAGCTGGTGAAGCAGCAGCTATGTGTTTGATGCTAGCGGCAAGGGTAGTTCAATCTGAAGGCATTGTAAGTAGTGTAGTTGCTGAGAAGGCAGCTGAAGCTTTTGAGGATCCGCGAGTTGTTGGAATGCCACAACTTGAAGGCAGTAGTGCCTTGTCAAATACTAGAACAGCAGCTGGTGGGTTTAGCATGGGTCAGGTTGTTCAGGAGGCCGAGCCTGTCTTTTCTGGGGCCCATGAGGGGCTCTGTTTGTGCTCATCAAGACTGCTTTTTCCTCTCTGGGAACTTCCTGTTATGGTTGTAAAAAGTGGCTTACATTCAACAGATGCTTCAATGGAAAATGGGATAGTTGTATGTAGAGTTTCTGCTGAAGCTATGCAAGTCCTTGAAAACAAAATCCGTTCCCTAGAGAAGTTTTTGAGGTCTAGAAGGAATCAGAGGAGAGGGCTATATGGTTGTGTAGCTGGTCTGGGGGATGTTACTGGCTCCATTTTATATGGAAATGGTTCAGAGTTAGTTTCTGGTGACCATAGCATGCCAAGAAACCTCTTCGGTGCATATCCCCGTAATGTTGACTCTAATGGAAATAGAACATCTGGTAAGAGGCAGAGATTACCATATAGTCCTGTTGAACTGGCTGCCATGGAGGTGAGGGCAATGGAATGTATCAGGCAATTGCTTCTTAGATCTGCCGAAGCTCTATTTTTTTTACAGCTACTTTCTCAGCATCATGTGACACGATTGGTTCAGGGGTTGGATTCTACATTGCGACAAGCAATAGTCCAATTGACATTTCACCAACTTGTTTGTTCGGAGGAGGGTGATCAACTTGCTACAAGACTTATTTCGGCCTTGATGGAGTTTTACACAGGTCCTGATGGCAGGGGCACAGTAGATGATATAAGTGCGAGGTTAAGAGAGGGTTGTCCTAGTTATTACAAAGAATCTGATTACAAATTTTTCTTGGCTGTGGAATCCCTAGAGAGAGCAGCTATGACTTTGGACCCTACTGCAAAGGAGAATCTTGCTAGAGAAGCTTTCAATTTCCTTAGTAAAGTTCCAGAGTCGGCAGATTTGAAAACTGTTTGCAAGCGTTTCGAGGATTTGAGATTTTATGAAGCAGTGGTTCGGTTATCTCTTCAAAAGGCACAGGCTCTTGATCCTGCTGGGGATGCTCTCAATGATGAAATCGATTTGGCTCTTCGAGAACGTGCAATTGCTCGGCGTGAGCAGTGTTATGAGATAATTATCGGTGCTTTGCGATCTTTGAAAGGTGACAATTCACAAAAGGAATTTGGGTCATCTTCGGGGCAAGGAGTTGCTCGATCTGCAATTGATCAGGCATCTCGAAAGAAATTCATACGTCAAATTGTGCAGCTTGGTGTCCAATCGCCTGACAGAATATTTCATGATTATTTATATCGAGCTATGATTGTTTTGGGCTTTGAAAACGAGTTATTAGAGTACGGAGGATCTGATTTGGTTCCTTTTCTACAAAGTGCTGGCCGTAAACCTATACAAGAAGTTCGAGCAATTTCAGCAATTACATCAGCGACTTCTCCATTGGGTCAATCAGGGGCACCTATTCAATCTGATCAAGTGAAATATTTTGATCTTTTGGCTAGATATTATGTCATGAAGCGAGAGCATTTGCTTGCTGCTCATGTATTGCTACGACTTGCTGAGAGACGAGCAAGTGATACTGGGGATGTTCCAACATTGGAGCAAAGGTGTCAATATTTAAGTAACGCAGTTCTACAAGCAAAGAATGCTAGTAACAGCAATGGTTTGATGGGCTCTACTCGAGGTGCATTAGACAATGGGCTGCTAGATTTGCTTGAAGGCAAGCTTGCAGTTCTTCGGTTTCAGATTAAGATTAAAGAGGAGCTAGATGTGATAGCCTCCAGGTTAGAAGCTCCGTCCAACATGTCTGCCTCTGATCAAAATGGATTGCTCCCTGAAAGTATCTTGGCTTCCGATGCTGATGTTGCAAATACAGCACGACAAAAGGCAAAAGAGCTATCATTAGATATAAAGAGCATAACCCAACTATACAATGACTATGCTGTTCCATTTGAGCTATGGGAGATATGTTTGGAAATGTTATACTTTGCAAATTATTCTGGTGATGCGGATAGTACTATCATAAGGGAAACTTGGGCACGACTTATTGACAAGTCTATCTCCAAAGGTGGCATTGCCGAAGCTTGTTCGACAATGAAGAGGGTTGGTTCTCATCTATATCCTGGCGAGGGAGCTGGTGTACCATTAGAAACTCTTTGTCTCCACCTTGAGAAGGCTTCACTGGAAAGATTAGATTCTGGTGTTGAACCAATTGGAGATGAAGATGTTGCCAGAGCACTGCTTGCTGCTTGTAAGGGCGCAACTGAGCCTGTATTGAACGCATATGATCTATTGTTGTCAAATGGAGCTATTGTGCCTTCACCTAAACTTCGACTGAGGCTTCTCCTATCAGTATTAGTCGTGCTACGTGAGTGGGCAATGTCATTAGTTGCACAGAGAGTGGGTAGTAGTGCAATTGGAGCTTCTCTAATACTAGGTGGAACGACACCACTTGCGCAAACCGCTGTTAGCCAACGGTTCCGAGACAAGATCACGAGCGCTACTAACAGAAGTCCGGCGGTTAGCTCTCCCACAGAGTCTAACGGAGACTGTTTATCGTGGGTTCCGGGAACTGGAAGATTTGTATGCGAACCGCCGCGGCTTTGTGGTTTTCCAAAAAGGAGAAAAACCAGCATGAACTGTGGCCGTTCATTAGGCACCGTAGCGGTGTCTGAAGATACTACCACGGTGTCTCAAGAGATTGTCACGGTGTCTGATCAAACCATAATGGTGTCTCAAGAGACCGCCACGATGTCTGACCAAACCGTCGTGGCATCTGTGGTGCCTGGAGGAACTGCCGCGGTTCAGGCTCCTACATTTTCACCTCGAACAAACAACAAAAACCTCGGCTCGGCGAACAAGAAGCTCCGACCTTCGATGAAAATGTATTCTCGAACAAAGAAATTGGTGTTCAAGGGAAGAGGTGGTACGTCACAATCGATATCAGAGGAGTCTGTTGGCTCAACAACGATGCATGAAGAAGCACTCGCCGCGGTGGAAGCTGTCAAAATAGTGGTGGTGCAACACAGAAAAACCGCGAAGGTTTTAGAAACTGTTGCAGAATCTCAATTTGAACTTCAACCCGAGCTTGAACAACGATTAACCGGAGGCTCAGTGATCTGGTTTCAACCCGTTACAGGGGGTTTCTAA 4974 44.21 MSWEEEIVMRDVTNAGLVISDRIGREVTSQLDLEEALEASRYSSHPYSTHPRELPPLVEVVDTWELPTVLIERYNASGGEGTALCGIFPEIRRAWASVDNSLYLWRFDKCDDQCPEYSAEEQAICAVGLARSKLGVFVEAIQHLLILATPVELILVGVCCSTGGSGMDPYAEISLQPLPEYTIPSDGVTMTCVTCTDMGRIFLAGRDGHIYELLYTSSSGWQKRCRKVCLTAGLGSAISRWVVPNVFKFGHVDPIVEMVFDNERCILYARTEEMKLQVFVLGSNGDGPLKKVAEERNLVNHKDEHYGSRQSAGARSASHSGKASIISISPLSTLESKSLHLVAILSDGRRMYLTTSPSNGNISGFELSHHKPSCLKVVATRPSPPLGVGGGLTFAGRHQNEDLSLKVETGFYSSGTLILADSSPPTISSLLIVSRDSGMQSSVSSTLTTRSSRALRESVSTLPLDGRMLYVADIQPSPDIAVSVQSIYSAIEYGGIGISDGSCGKAIGKFWARGDLSNQHIFPRRRVIVFSTMGMMEVVFNRPVDLLRKLLESNSPRSNLEDFFNRFGAGEAAAMCLMLAARVVQSEGIVSSVVAEKAAEAFEDPRVVGMPQLEGSSALSNTRTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKSGLHSTDASMENGIVVCRVSAEAMQVLENKIRSLEKFLRSRRNQRRGLYGCVAGLGDVTGSILYGNGSELVSGDHSMPRNLFGAYPRNVDSNGNRTSGKRQRLPYSPVELAAMEVRAMECIRQLLLRSAEALFFLQLLSQHHVTRLVQGLDSTLRQAIVQLTFHQLVCSEEGDQLATRLISALMEFYTGPDGRGTVDDISARLREGCPSYYKESDYKFFLAVESLERAAMTLDPTAKENLAREAFNFLSKVPESADLKTVCKRFEDLRFYEAVVRLSLQKAQALDPAGDALNDEIDLALRERAIARREQCYEIIIGALRSLKGDNSQKEFGSSSGQGVARSAIDQASRKKFIRQIVQLGVQSPDRIFHDYLYRAMIVLGFENELLEYGGSDLVPFLQSAGRKPIQEVRAISAITSATSPLGQSGAPIQSDQVKYFDLLARYYVMKREHLLAAHVLLRLAERRASDTGDVPTLEQRCQYLSNAVLQAKNASNSNGLMGSTRGALDNGLLDLLEGKLAVLRFQIKIKEELDVIASRLEAPSNMSASDQNGLLPESILASDADVANTARQKAKELSLDIKSITQLYNDYAVPFELWEICLEMLYFANYSGDADSTIIRETWARLIDKSISKGGIAEACSTMKRVGSHLYPGEGAGVPLETLCLHLEKASLERLDSGVEPIGDEDVARALLAACKGATEPVLNAYDLLLSNGAIVPSPKLRLRLLLSVLVVLREWAMSLVAQRVGSSAIGASLILGGTTPLAQTAVSQRFRDKITSATNRSPAVSSPTESNGDCLSWVPGTGRFVCEPPRLCGFPKRRKTSMNCGRSLGTVAVSEDTTTVSQEIVTVSDQTIMVSQETATMSDQTVVASVVPGGTAAVQAPTFSPRTNNKNLGSANKKLRPSMKMYSRTKKLVFKGRGGTSQSISEESVGSTTMHEEALAAVEAVKIVVVQHRKTAKVLETVAESQFELQPELEQRLTGGSVIWFQPVTGGF 1657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33607974 33618743 - BLOR17611 Blo06g01028 62321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01028 1657 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 868 1291 IPR007187 -
Blo06g01028 1657 Gene3D - 1179 1413 IPR042538 -
Blo06g01028 1657 Gene3D - 524 876 - -
Blo06g01028 1657 Coils Coil 693 713 - -
Blo06g01028 1657 Pfam Nup133 N terminal like 54 493 IPR014908 -
Blo06g01028 1657 PANTHER BNAC05G49530D PROTEIN 2 1449 - -
Blo06g01028 1657 Gene3D Nucleoporin, helical domain, central subdomain 1050 1152 IPR042537 -
Blo06g01028 1657 Gene3D - 887 1046 IPR042533 -
Blo06g01028 1657 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 2 1449 IPR004870 GO:0005643|GO:0006913|GO:0017056
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01028 K14312 NUP155, NUP170, NUP157; nuclear pore complex protein Nup155 - qsu:112033963 2264.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01028 Blo-Chr6:33607974 Blo05g00495 Blo-Chr5:8238885 1.27E-12 dispersed
Blo06g01028 Blo-Chr6:33607974 Blo15g00403 Blo-Chr15:5754119 7.06E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g496 . . . . . . . . Cmo04g01098 . Cma04g01023 . Car04g00958 . Sed06g0156 . . Bhi07g00387 Tan04g1515 Cmetu10g1305 Lac13g1337 . . . . . . . . . . . . . . . . . . Blo06g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01250 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007657 2 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 34