Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01033 ATGCCCATCCTCATGGCCCTCCAAGACAACGCTCCTTCTCTCGCCGTCGTTGGCGTTACCGGCGCCGTCGGTCAGGAGTTCCTCTCCGTTCTCTCCGACCGGGACTTCCCCTACCGCTCCATAAAAATGCTGGCCTCCAAGCGCTCCGCTGGCAAATCGCTTACGTTTCAGGACAAAGAGTATGTTGTCGACGAGCTCACTCCCGAAAGCTTTAAGGGCGTTGATATTGCTCTCTTCAGCGCCGGAGGCTCTATTAGCAAGGAATTCGGGCCCATTGCCGTTGATAAGGGTGTTATTGTGGTTGACAATAGCTCGGCATTTCGAATGCACGAGAATGTGCCGCTTGTAATTCCGGAGGTTAATCCCGATGCCATGGCGGGAATTTCTCTTGGGATGGGCAAGGGAGCGTTGATTGCTAACCCAAATTGCTCCACTATCCTCTGTTTGATGGCTGTTACCCCACTTCATCGTCACGCGAAGGTTGTACGAATGGTTGTTAGTACATATCAAGCAGCCAGTGGTGCTGGTGCTGCAGCAATGGAAGAGCTTCTGCAGCAAACGCGTGAGGTCTTGGAAGGAAAAGAACCGACTTGCAAAATCTTTAATGATCAGTATGCTTTCAATCTATTCTCTCACAATGCATCGGTTCTTTCAAATGGGTACAATGAAGAGGAAATGAAACTGGTAAAGGAGACGAGGAAAATATGGAATAATGAAAATGTGAAAGTTACTGCAACATGCATACGTGTTCCTGTCATGCGAGCACATGCTGAGAGTGTGAATCTTCAATTTGAGAATCCCCTTGATGAGGAGTGTGCCAGGAGTATTCTGAAGAATGCTCCTGGCGTAGTGGTTATTGATGATCGAGCATCCAACGTATTTCCCACACCATTAAAGGTGTCAAACAAAGACGAGATTGCAGTGGGGAGGATACGGCGCGATGTATCACAAGAAGGAGACCATGGACGGAAACAAACAATGGTGAAGTCGTCGGAGAGGGATAGGGAGAGAGAGGGGTCAGCGACGCCCCCTTTTCTGAACAAGTGCTACGAGATGGTCGACGACTCCGCTACGGATTCCATTATCTCCTGGGGTCAGACCAAGGACAGCTTTGTGATATGGGACATGACTCAGTTCTCTGTCAATTTGCTTCCTAAATTCTTTAAGCATAGTAATTTTTCCAGTTTCATGAGGCAGCTTAATATATATGGGTTTAGAAAAATCGACATGGACCGCTGGGAATTTGCAGCCAATGGATTTATAAAAGATCAAAAGCACCTGCTGAAGACTATCTGTAGAAGGAAAAACATTCAGGCACTTGATCAACACAAGGCATTGCAGACTCAGGAGAACTCCCCCGAGACAGACGAGAAGAAAACTGAAAGTTTCGGACTGTGGAAGGAAGTTGAGATTCTGAAAACCGATAAAAATGTTCTAATGCAAGAATTAGTTAAAGTGAGGCAGCACCAAGAAACTGCAACAAATAGGTTACTTATTTTGAGAGATCGCCTTCGTGGTATGGAAAAGAATCAGGAGCAGATACTGTCGTTCTTGGTCATGGCTGTTCAAAACCCTTGTTACTTTATTCAGCTACTTAAACCAAAGGAGAATAATTGGGGTAAAGCTGAAGTTGGAAATATGCTTGAGCCTGTTATAGAGGATAGTAAGAAAGCATCCTTTGATGGTGCAATAGTGAGATACCAGCCACCAAAGGATGATATTCCAATGGCTGTGCTATCACCTATTTCAGACTCAGGTAAGCAACAAGAATCTGATCTCTTTCTTGACAAGGTGGAAGATTTCTTCGTTAATTGTGATTTCATGAAAGTGATGATGGATGAAAAATTGTGTCCAGTTGAACATTCTGGCCCTTTTATTCTGCCGGATTTGCATGATGACACTGCTTGGGAACAGCTTCTATTATCCAGTCCTTTCTCCAACAACACTGAATATGGAGAACTGGATGGAGAGGGACCCCCTGACTCTGAGATGGAGATGGATTTATCGACGCTTGAGAGCCCACTAGAGGAATCGGAAAGTTTTCGGGTTTGGATTGAACAAATGGAGGCATCTAAAAGAGTTGAGATGGAATCAGTTAGAGATTGTGCTGAGACGGAGAAAACAAAATCTGTGGAGATTATAACTAACCAAATGGAGCTTTTAGCTGCCAATTCTCGACAAAAAGGAAACATGCATGATTCTTAG 2205 44.99 MPILMALQDNAPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKSLTFQDKEYVVDELTPESFKGVDIALFSAGGSISKEFGPIAVDKGVIVVDNSSAFRMHENVPLVIPEVNPDAMAGISLGMGKGALIANPNCSTILCLMAVTPLHRHAKVVRMVVSTYQAASGAGAAAMEELLQQTREVLEGKEPTCKIFNDQYAFNLFSHNASVLSNGYNEEEMKLVKETRKIWNNENVKVTATCIRVPVMRAHAESVNLQFENPLDEECARSILKNAPGVVVIDDRASNVFPTPLKVSNKDEIAVGRIRRDVSQEGDHGRKQTMVKSSERDREREGSATPPFLNKCYEMVDDSATDSIISWGQTKDSFVIWDMTQFSVNLLPKFFKHSNFSSFMRQLNIYGFRKIDMDRWEFAANGFIKDQKHLLKTICRRKNIQALDQHKALQTQENSPETDEKKTESFGLWKEVEILKTDKNVLMQELVKVRQHQETATNRLLILRDRLRGMEKNQEQILSFLVMAVQNPCYFIQLLKPKENNWGKAEVGNMLEPVIEDSKKASFDGAIVRYQPPKDDIPMAVLSPISDSGKQQESDLFLDKVEDFFVNCDFMKVMMDEKLCPVEHSGPFILPDLHDDTAWEQLLLSSPFSNNTEYGELDGEGPPDSEMEMDLSTLESPLEESESFRVWIEQMEASKRVEMESVRDCAETEKTKSVEIITNQMELLAANSRQKGNMHDS 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33651322 33656812 + BLOR17616 Blo06g01033 62326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01033 734 SMART hsfneu3 341 434 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo06g01033 734 MobiDBLite consensus disorder prediction 313 341 - -
Blo06g01033 734 Gene3D - 14 142 - -
Blo06g01033 734 SUPERFAMILY Winged helix DNA-binding domain 341 434 IPR036390 -
Blo06g01033 734 Pfam Semialdehyde dehydrogenase, NAD binding domain 14 126 IPR000534 GO:0016620|GO:0051287
Blo06g01033 734 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 5 323 - -
Blo06g01033 734 PRINTS Heat shock factor (HSF) domain signature 383 395 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo06g01033 734 PRINTS Heat shock factor (HSF) domain signature 396 408 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo06g01033 734 PRINTS Heat shock factor (HSF) domain signature 345 368 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo06g01033 734 MobiDBLite consensus disorder prediction 647 667 - -
Blo06g01033 734 SMART Semialdhyde_dh_3 13 128 IPR000534 GO:0016620|GO:0051287
Blo06g01033 734 TIGRFAM asd_B: aspartate-semialdehyde dehydrogenase 14 318 IPR005986 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
Blo06g01033 734 Gene3D Dihydrodipicolinate Reductase; domain 2 143 319 - -
Blo06g01033 734 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 170 IPR036291 -
Blo06g01033 734 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 142 318 - -
Blo06g01033 734 ProSitePatterns HSF-type DNA-binding domain signature. 384 408 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo06g01033 734 Gene3D - 340 435 IPR036388 -
Blo06g01033 734 Pfam Semialdehyde dehydrogenase, dimerisation domain 153 316 IPR012280 GO:0008652|GO:0016620|GO:0046983
Blo06g01033 734 PANTHER BNAA09G26740D PROTEIN 5 323 - -
Blo06g01033 734 MobiDBLite consensus disorder prediction 313 342 - -
Blo06g01033 734 Pfam HSF-type DNA-binding 345 434 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01033 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] - csin:114295897 539.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01033 Blo-Chr6:33651322 Blo16g00980 Blo-Chr16:38102549 4.96E-49 dispersed
Blo06g01033 Blo-Chr6:33651322 Blo17g00285 Blo-Chr17:3018851 2.20E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g506 . . . . . Bpe10g01005 . Bma15g00024 Cmo04g01106 . Cma04g01035 . Car04g00966 Car04g00081 Sed04g2992 . . Bhi07g00410 Tan04g1488 Cmetu10g1235 Lac13g1310 Hepe01g0605 . . Cla07g00525 Cam07g0564 Cec07g0614 Cco07g0589 Clacu07g0565 Cmu07g0602 Cre07g0934 . . Cone6ag0356 Cone9ag0387 Lsi04g00990 . . . Blo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005424 1 1 1 1 2 1 2 1 1 0 1 1 2 0 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12529 PF02774 Semialdhyde_dhC 1.70E-40 CL0139 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01033 Blo_Chr06 FPKM 0.0 0.387781 0.0 0.0 2.152474 1.535802 1.719882 0.0 0.647313 0.501599