Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01035 ATGGAGGAGGAGAAACAACCAGAAGAAGCCGATCAAGAAGATCAGGTTGTGAATCCATGGCAAGTTTCCGCCAAAGATGGAGGAAAGATTGACTACGACAAGCTCATCGACAAGTTTGGTTGTCAGAGGCTTGATAATTCCCTCGTCCTCCGTGTCCACCGCCTCACTTCCCGCCCTCCCCATGTTTTCCTCCGCCGCGGCGTCTTTTTCGCTCACCGGGATTTCGATGACATTTTGAATTTGTACGAGAGAGGGGAGAAGTTCTATTTATACACTGGAAGAGGGCCTTCTTCAGAAGCTTTGCATTTGGGGCATCTCGTTCCTTTCATGTTCACAAAGTATTTGCAAGATGCATTTAAGGTTCCGTTGGTTATACAACTCACTGACGATGAGAAGTGCATGTGGAAAAATCTCTCTGTGGAGGAGAGCCAAAGACTTGCACGTGAGAATGCTAAAGACATTATTGCTTGTGGTTTTGACATTTCCAAAACTTTCATCTTCTCCGATTTTGATTATGTTGGTGGTGCCTTCTACAAGAACATGGTCAAAGTAGCAAAGTGTGTCACATACAATAAAGTTGTAGGTATTTTTGGTTTTACTGGTGAAGATCATATTGGCAAAGTTAGTTTTCCACCAGTCCAGGCGGTTCCATCATTTCCAAGTTCCTTTCCACACCTTTTCTCTGGTAGGGATCAATTGCGATGCTTGATCCCCTGCGCTATAGACCAGGATCCTTACTTCCGAATGACAAGAGATGTGGCTCCTCGAATAGGTTATCAAAAACCTGCCCTTATTGAATCTACTTTCTTCCCTGCCTTGCAGGGGGAGAACGGAAAAATGTCAGCTAGTGATCCAAACTCTGCCATATATGTGACAGACTCCTCAAAGGATATTAAGAACAAGTTTCTAGTATATAACCTGGTTATTTCTGTTCTTGTAGATATACCAATCAAATACCTCAACTTTTTCCTTGACGATGATGATGAACTGGAACATATAACAAGGGAATATGGTGAGGGGCGAATGCTGACAGGTGAGGTGAAGCAACGTCTCATCCAAGTTTTGACGGAATTGGTGGAAAGACATCGGAGGGCTCGTGCAGCTGTGACAGATGAGATGGTGGATGCATTTATGGCAGTCAGACCCCTTCCCAATATGCTTCTTCATTCTTCTACTGGTAAGGGCTCTCTCCCTCTCTTTATCACACACACGCTGTCTCTTCAAAAGGTCATGTTTGGGGAGAAGGGTCTTTCACCTGAGGCTGAGCAGTCTCAGAGCAAGCTCTCTCGCCTTGTTTCTGACCGGAATAGGGAAATCCAAGCTCAAAAAATGAGGGTTTCTGATAAAAACATAAATCATTTCAGAGAAACTGACATGGTTGCTCATGGGTTTCAATTACCCTTCAAAATCTCTAATTCAAGCTCCCAGGAGCTTACTCTTACCGACCTTTGTGATAATTCCAAATTGGGTTTGCTCGAGAAAGATATTCCCGGTAGAATTTTCTTAGAGAAAGTCAGCTACAAAGGAAAAGAAGTTGTCATGTCTGACAGTTTCAATGAAGATAACAAATGGGTAGGGAGAGATTTCCTGAATTTGGACGAGAAGAGAGAGAAATCGTCGAAACGAGACGTTGCAGAAGATGTTGAGAGAGAGAACAGAGAAAAGAGGCCAAAGCTTGAGACTTTAAATCTTTCACTAGCTTTACCTGAACCATCTCTTTCTCTCACCCCTTCAAATGCCATGCAAAATGAAGACCCAGCAGCTCGATCTAACCTTGCGAGGAGCATACAGTCTTTAGCCCCATCAAACAACAATACTAAAACCACATGTTCCAATGATTTTACAGCTGCTTCGCTCTCTTACTCGTACTCCCATCCTTTTTCTCACAACCCCAGCTGCTCTTTGACACATAATTCGACTGAAAATTATGATTGTTTGGCTGGTAGAAATGATCAGATTTGGAATTGTGGAGAGGGGACAAACGGTTCTGTTCATAGTCGGTTTAAGCCATTGGGAGATGGGGTCACTTTATCCAATCATGGAGGTAGTCTTTTTTCGATAATGCAGGGAAATCGCATGGTGAACAAGGATTCTCATAATAATCATAATTTACCCACTGGCTCAGATAACCATTCCTTTTTTCCATCTGATTTACCTGCTAGACTAAGGATTGAAGCACCATCTGGGGATTCAAGAGGAAGAAATTCTGAGAGTTTGGGAGGATCGGAGGGTGTTGACGTTGGGAGGGTAAGAAAGCTTTCTAGACCCGAGAGAATTCTTCGTGAAATTGTTTTTGAATCAGTACATATTGCTAATCAAACAATTCTAGAGCTGACGAGTGAAACACTTGCGGCAACAAAGAATTACCTAAAGGATCTAATTGAAATGCGTGGAAATAGAGAGGAATTAGTAGCCCTGCAACAACAGCTTGGGCGAAGATCTGATCTTACGAAGGGAACTCTCTCAAAATGCCAGAGTGACCATCTGGAAATCTTGGTAGCCATAAAGATGGGCCTAGGAAGCTTCATAAGCGGAAAAACATGCATCTCCCCTGCAGATCTGGTAGACATTTTCTTGCTTCTGAGATGCAGAAACTGCCGGAATGTAGTGCCCGTCGATGACTGCGACTGCAAGATTTGCTCATCAAACAAAGGATTCTGCAGCACATGCATGTGCCCTGTGTGTTTGAACTTTGATTGGGCAAACAACACTTGCAGTTGGGTCGGCTGTGATGTGTGCTCCCATTGGTGCCATGCCGCCTGTGGGATTCAGAAGAAATTTATAAGGCCAGGTCCGAGCTTGAAGGGAAGGATGGGGACAACCCAGATGCAATTTCACTGCATCACCTGTGGCCATGCTTCGGAAATGTTTGGTTTTGTTAAGGATGTTGTCCTTTACTGTGCTCAGGACTGGGGCCATGAAACCTTGGCCAAGGAACTTGAGTGTGTGAAACAGATTTTCAGGGGAAGTGAAGATGTTAAAGGCAAGGAACTGTTTTGTAAAGCTGAAGAGATGGTCTCTAAACTCAATAGTAGAATTATTTCTGCTCGTGATGCCTGCGAGCTTATCATTCAGTTCTTCCACTATGCAGATACGCTGTCAGATTTTTCGACTACAGATGCTACTCCTAAAGAGTTGTTGATGGCAAAAACTGGCACAAAAGAGATTGCCACCCCATTTCTTCAGCCGGGATTGAAATCATTCCCATATACTTTTGAGAAAATGAGGTCTTTTAGTGAGCAAAGCGATCTACTTTCGAACGATCATCACCAAGCCAAAAAGTTTTCCTTCAAAACTTCGCCTAAAAGTGAAGGGCTCGAGAGCATAGTGAGGATCAAGGAAGCCGAGGCGAGAATGTTCCAAAACAAGGCAGATGATGCGAGGAGAGAGGCGGAAGGATTGGAGCAGATAATTATCGCAAAAGCTCGGGAACTGGAAGAAGATTACGGGGGGAAGCTTGCTAAGTTGTGCATGGAAACGACGGATGAGAAGCGGAGGAAGAAAGTGGAAGAGCTGAAAGTTATGGAGGATTCTCACTTTGATTATTTCAATATGAAGATGAGAATGCAAAACGAGATTAGTGGTTTATTGCAGAGAATGGAGGCAACTAAGAATCAATTGGTCTGA 3627 43.64 MEEEKQPEEADQEDQVVNPWQVSAKDGGKIDYDKLIDKFGCQRLDNSLVLRVHRLTSRPPHVFLRRGVFFAHRDFDDILNLYERGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDISKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGRDQLRCLIPCAIDQDPYFRMTRDVAPRIGYQKPALIESTFFPALQGENGKMSASDPNSAIYVTDSSKDIKNKFLVYNLVISVLVDIPIKYLNFFLDDDDELEHITREYGEGRMLTGEVKQRLIQVLTELVERHRRARAAVTDEMVDAFMAVRPLPNMLLHSSTGKGSLPLFITHTLSLQKVMFGEKGLSPEAEQSQSKLSRLVSDRNREIQAQKMRVSDKNINHFRETDMVAHGFQLPFKISNSSSQELTLTDLCDNSKLGLLEKDIPGRIFLEKVSYKGKEVVMSDSFNEDNKWVGRDFLNLDEKREKSSKRDVAEDVERENREKRPKLETLNLSLALPEPSLSLTPSNAMQNEDPAARSNLARSIQSLAPSNNNTKTTCSNDFTAASLSYSYSHPFSHNPSCSLTHNSTENYDCLAGRNDQIWNCGEGTNGSVHSRFKPLGDGVTLSNHGGSLFSIMQGNRMVNKDSHNNHNLPTGSDNHSFFPSDLPARLRIEAPSGDSRGRNSESLGGSEGVDVGRVRKLSRPERILREIVFESVHIANQTILELTSETLAATKNYLKDLIEMRGNREELVALQQQLGRRSDLTKGTLSKCQSDHLEILVAIKMGLGSFISGKTCISPADLVDIFLLLRCRNCRNVVPVDDCDCKICSSNKGFCSTCMCPVCLNFDWANNTCSWVGCDVCSHWCHAACGIQKKFIRPGPSLKGRMGTTQMQFHCITCGHASEMFGFVKDVVLYCAQDWGHETLAKELECVKQIFRGSEDVKGKELFCKAEEMVSKLNSRIISARDACELIIQFFHYADTLSDFSTTDATPKELLMAKTGTKEIATPFLQPGLKSFPYTFEKMRSFSEQSDLLSNDHHQAKKFSFKTSPKSEGLESIVRIKEAEARMFQNKADDARREAEGLEQIIIAKARELEEDYGGKLAKLCMETTDEKRRKKVEELKVMEDSHFDYFNMKMRMQNEISGLLQRMEATKNQLV 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33666253 33674959 + BLOR17618 Blo06g01035 62328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01035 1208 MobiDBLite consensus disorder prediction 537 557 - -
Blo06g01035 1208 CDD TrpRS_core 89 358 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Blo06g01035 1208 Gene3D - 310 394 - -
Blo06g01035 1208 Pfam tRNA synthetases class I (W and Y) 86 302 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo06g01035 1208 Pfam PHD - plant homeodomain finger protein 864 984 IPR032881 -
Blo06g01035 1208 PANTHER PROTEIN OBERON 3 413 1207 - -
Blo06g01035 1208 TIGRFAM trpS: tryptophan--tRNA ligase 87 301 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Blo06g01035 1208 Coils Coil 1186 1206 - -
Blo06g01035 1208 SUPERFAMILY Nucleotidylyl transferase 15 381 - -
Blo06g01035 1208 MobiDBLite consensus disorder prediction 725 744 - -
Blo06g01035 1208 CDD PHD_OBE1_like 891 950 - -
Blo06g01035 1208 Gene3D HUPs 8 284 IPR014729 -
Blo06g01035 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 854 875 IPR004082 -
Blo06g01035 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 898 918 IPR004082 -
Blo06g01035 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 828 843 IPR004082 -
Blo06g01035 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 774 796 IPR004082 -
Blo06g01035 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1104 1124 IPR004082 -
Blo06g01035 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 813 828 IPR004082 -
Blo06g01035 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1143 1165 IPR004082 -
Blo06g01035 1208 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 971 990 IPR004082 -
Blo06g01035 1208 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 413 1207 IPR004082 -
Blo06g01035 1208 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 96 106 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo06g01035 1208 Coils Coil 1110 1144 - -
Blo06g01035 1208 Pfam Coiled-coil region of Oberon 1087 1197 IPR032535 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01035 - - - pper:18789922 958.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01035 Blo-Chr6:33666253 Blo11g00963 Blo-Chr11:21537614 0 dispersed
Blo06g01035 Blo-Chr6:33666253 Blo05g00211 Blo-Chr5:2167156 2.01E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004341 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 3 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01035 Blo_Chr06 FPKM 3.000323 2.33319 0.937898 1.192287 5.118659 4.451761 5.335352 0.472787 0.449912 0.551111