Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01037 ATGCCGAGTATAAATAACCGCCTGTTCTACTTGCCATTTCATTCTTCTTTCTCGGAACAAATGGAAATGGCGGCCGTTTCTCTCTCCTCCTCTTCACTCGTTAAGCACAGTTCTACATTCTCGCTCAAATCTCCGACGATTCCTCTGCTGCCTCGCCTCAATACAGCCTCTCAACTTCGCATTCATGTGAAATATCCGGATCGATTTGTGGTGAATGCGGCGATCTCAGTTTCTGAATCTAATTCGAGGTCTCCTGTTTTGAACAAGTCACCTAATCCAATTATAGTCATTGACAACTACGACAGCTTCACCTACAACCTTTGTCAGTACATGGGAGAGTTGGGATGTCATTTTGAGGTTTATCGAAATGATGAATTAACGGTGGAGGATCTGAAGAGGAAAAATCCCAGAGGAGTGCTGATCTCACCAGGGCCTGGCACACCTCAGGATTCTGGGATATCATTGCAAACAGTGCTGGAACTTGGCCCTATTGTTCCTCTATTTGGTGTCTGCATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAAATTGTGCGTTCCCCTTTTGGTGTTATGCATGGAAAAAAGTCGCTTGTGTATTATGATGAGAAAGGAGAGGATGGACTCTTCGCTGGCTTACAAAATCCTTTCATTGCTGGCCGATATCATAGCCTAGTAATCGACAAGGAGAGTTTTCCTTCTGATGAGTTAGAAATCACAGCATGGACAGAAGATGGACTGATAATGGCTGCTCGGCACAAGCGATATAAGCATATACAAGGCGTTCAGTTCCACCCAGAAAGTATTATAACAAGCGAAGGCAAGACAATTGTGTACAACTTTGTGAGAATGCTAGAGAGGAATGAAGCTGAATAA 879 44.25 MPSINNRLFYLPFHSSFSEQMEMAAVSLSSSSLVKHSSTFSLKSPTIPLLPRLNTASQLRIHVKYPDRFVVNAAISVSESNSRSPVLNKSPNPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEDLKRKNPRGVLISPGPGTPQDSGISLQTVLELGPIVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKKSLVYYDEKGEDGLFAGLQNPFIAGRYHSLVIDKESFPSDELEITAWTEDGLIMAARHKRYKHIQGVQFHPESIITSEGKTIVYNFVRMLERNEAE 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33681357 33684002 - BLOR17620 Blo06g01037 62330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01037 292 SUPERFAMILY Class I glutamine amidotransferase-like 94 287 IPR029062 -
Blo06g01037 292 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 166 182 - -
Blo06g01037 292 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 136 150 - -
Blo06g01037 292 CDD GATase1_Anthranilate_Synthase 94 283 IPR006221 -
Blo06g01037 292 Gene3D - 92 285 IPR029062 -
Blo06g01037 292 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 93 292 - -
Blo06g01037 292 PANTHER ANTHRANILATE SYNTHASE BETA SUBUNIT 1, CHLOROPLASTIC 45 291 - -
Blo06g01037 292 TIGRFAM trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 94 284 IPR006221 -
Blo06g01037 292 Pfam Glutamine amidotransferase class-I 96 283 IPR017926 -
Blo06g01037 292 PRINTS Anthranilate synthase component II signature 215 227 - -
Blo06g01037 292 PRINTS Anthranilate synthase component II signature 139 148 - -
Blo06g01037 292 PRINTS Anthranilate synthase component II signature 192 200 - -
Blo06g01037 292 PRINTS Anthranilate synthase component II signature 262 275 - -
Blo06g01037 292 PRINTS Anthranilate synthase component II signature 94 108 - -
Blo06g01037 292 PRINTS Anthranilate synthase component II signature 166 177 - -
Blo06g01037 292 PRINTS Glutamine amidotransferase superfamily signature 262 275 - -
Blo06g01037 292 PRINTS Glutamine amidotransferase superfamily signature 166 177 - -
Blo06g01037 292 PRINTS Glutamine amidotransferase superfamily signature 139 148 - -
Blo06g01037 292 PANTHER MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED 45 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01037 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] - mnt:21402235 402.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01037 Blo-Chr6:33681357 Blo16g00536 Blo-Chr16:22177419 7.22E-13 dispersed
Blo06g01037 Blo-Chr6:33681357 Blo04g00316 Blo-Chr4:2492374 6.89E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g542 . . . . . Bpe10g01010 . Bma15g00019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g01037 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003870 1 2 1 1 1 2 1 4 3 0 2 2 1 1 1 1 2 1 1 4 1 3 1 1 1 1 1 2 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01037 Blo_Chr06 FPKM 22.674038 25.854397 48.252125 51.909451 16.805037 17.699646 16.964991 15.440825 13.826233 15.427528