Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01038 ATGCCATCGGGAAATATGATACTACCTGATAAAATGCCACTTCCGAGTGGCGGCGGCGGCGGAGGATTTGGGGGTGGAGCTAGTGGCGAAGTCCATCAGCATCACCTCCGGCAATGGTTTCCTGATGAACGGGACGGGTTTATTTCATGGTTGCGAGCTGAATTTGCTGCTTCAAATGCGATTATAGATTCACTTTGCCATCATTTGCGTGCAGTAGGTGAACGGGGCGAGTATGATGTAGTAATTGGTCATATACAACAAAGGCGATTTAACTGGAACCCGATACTTCATATGCAGCAATATTTTCCTGTAGCCGATGTAGTTTATGCTCTTCAACAGGTCACTCTGAGGAGGCAGCAGAGGTATTTTGATCCCGTAAAGATGCCGAGCAAGGATTTAAGGAGGTTTCCAATGGGGTCTAAACAGGGTCATTGGGTTGAACACACAAAAGAAGTACAAGTTGCTAATGTAGAAGTCCAATCAGAGGGAGACGTCGACAAATTTGGTGATAAAAGCTCAGCATTAATGGAAGAGAAAAATGAGAGCGTTGTAAAAGATCAAACTGATGACAAGCTGAACAGTAAAGAAGTTGTTGTAGGATCAGCTGACAACACAGAGCCTCTAGTTGAAGGGGCAGGCGATGGATGCAGCTCAAGTCATGAAGAAAACAATTTTGAGTCCTTCCAAGATAAACCTGAGAAGCAGAGTGCTGCCATTGTGCCAAAAACTTTTGTTGCCCCTGAGATATTCGATGGAAAAACAATTAACGTGGTGGATGGACTCAAACTGTATGAAGAGTTGTTTGATGATGCTGAGGTTTCAAAACTTGTTTCGTCGGTGAATGATCTGAGGAGTGCTGGGAAAAAAGGACAATTGCCAGGCAAGTTTCTTTTGCATGTCATTCTCTCAACAGTGACAACAGGTCAAACGTATGTGGTATCAAAGAAGCCATCAAAAGGACGCGGTAGAGAGATGATTCAACTAGGTCTTAACATTGCAGACGCACCTGCTGATGATGAAAAGGCTGCCAGAATGTCTAAAGATGGGAAAATCGAATCCATTCCTTCCTCAATCCAAGATGTGATTGAACGCTTGGTTAACATGCAAGTTACAAATGTGAAGCCAGACTGTTGCATCATTGATTTCTACAACGAGGGTGATCACTCACAACCTCATGTGTTGCCTCCGTGGTATGGAAGGCCTGTTTGCATCCTATTTTTGACAGAATGTCAAATGTCTTTCGGTAGAGTAATTGGAATAGACCGTCCTGGAGATTTTAGAGGTTCTCTGAAACTGTGTCTTTCTTCTGGGAAGTTTAGGATGTGCTGGCTGGATTTGTGGTTCCTTGTGAAGGAGGGGAGGGAGAACAAAAAAGTCGTTGAAAATGATCTACTATCTCTGCTCGTGATGGAAGGAAACTCAACGGATTTTGCGAAACATGCCATCTATTCAAGTCGTAAGCAGCGGATACTTATTACTCTAACCAAGTCACTACCAAAGAAAGCTGATACCCTCCGCATATCTTCTTCAACCACCGGCACGCCAAACTGGAGCCCATCTCCAAGCTGGTCTCCCAACCACATTCGCCATTCCATGGGACACAAGCGGTTTTCAGCCATTCCAACACCAGCTGTTTTAGCACCGGCCCCACCCATTCACCCTCACATTGCGACTCCAAATGGCCTAACGCCTTTGTTTGTCCTCCCACCTACGGCGATGCCTTATCCTTCAGGGGTTCCTATCCCCCCGACTTCGTCAGCATGGCCAGGTCCACCCCCTCCGAGGCATCCTTCTCCATCTCTTCCCTTTTCTGGGACCGGAGTTTTTCTTCCACCCCCAGGTTCTGGAAATTCTTCATCAGCACAACCGATATTGAGTTCTGCAAATGAAATGAGCCTAGCAGGGGAGGCAGAAAATAGTATGTCCGTAAAATCAGATCATCATTCTAGCGCATCTCCAAAGGAGCAACCTAATGTAAAACCTCAAACAGAAGACTGCAATGGAAGCATCGAGGCAAACATTGAGCAACGGAGCAGTGGCGATTGA 2046 45.8 MPSGNMILPDKMPLPSGGGGGGFGGGASGEVHQHHLRQWFPDERDGFISWLRAEFAASNAIIDSLCHHLRAVGERGEYDVVIGHIQQRRFNWNPILHMQQYFPVADVVYALQQVTLRRQQRYFDPVKMPSKDLRRFPMGSKQGHWVEHTKEVQVANVEVQSEGDVDKFGDKSSALMEEKNESVVKDQTDDKLNSKEVVVGSADNTEPLVEGAGDGCSSSHEENNFESFQDKPEKQSAAIVPKTFVAPEIFDGKTINVVDGLKLYEELFDDAEVSKLVSSVNDLRSAGKKGQLPGKFLLHVILSTVTTGQTYVVSKKPSKGRGREMIQLGLNIADAPADDEKAARMSKDGKIESIPSSIQDVIERLVNMQVTNVKPDCCIIDFYNEGDHSQPHVLPPWYGRPVCILFLTECQMSFGRVIGIDRPGDFRGSLKLCLSSGKFRMCWLDLWFLVKEGRENKKVVENDLLSLLVMEGNSTDFAKHAIYSSRKQRILITLTKSLPKKADTLRISSSTTGTPNWSPSPSWSPNHIRHSMGHKRFSAIPTPAVLAPAPPIHPHIATPNGLTPLFVLPPTAMPYPSGVPIPPTSSAWPGPPPPRHPSPSLPFSGTGVFLPPPGSGNSSSAQPILSSANEMSLAGEAENSMSVKSDHHSSASPKEQPNVKPQTEDCNGSIEANIEQRSSGD 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33687700 33693391 + BLOR17621 Blo06g01038 62331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01038 681 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 466 675 - -
Blo06g01038 681 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 438 - -
Blo06g01038 681 MobiDBLite consensus disorder prediction 586 600 - -
Blo06g01038 681 MobiDBLite consensus disorder prediction 654 681 - -
Blo06g01038 681 MobiDBLite consensus disorder prediction 586 681 - -
Blo06g01038 681 Gene3D - 246 441 IPR037151 -
Blo06g01038 681 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 466 675 IPR044842 GO:0003729|GO:0006402|GO:0032451
Blo06g01038 681 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 1 438 IPR044842 GO:0003729|GO:0006402|GO:0032451
Blo06g01038 681 MobiDBLite consensus disorder prediction 205 234 - -
Blo06g01038 681 MobiDBLite consensus disorder prediction 611 647 - -
Blo06g01038 681 SUPERFAMILY Clavaminate synthase-like 348 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01038 - - - pper:18788999 635.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g01038 Blo11g00962 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01038 Blo-Chr6:33687700 Blo11g00962 Blo-Chr11:21377540 0 dispersed
Blo06g01038 Blo-Chr6:33687700 Blo05g00345 Blo-Chr5:4010730 4.97E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g543 . . . . . Bpe10g01011 . Bma15g00018 . . . Cma04g00036 . Car04g00042 . . . . . . . . . . . . . . . . . . . Cone6ag0337 Cone9ag0371 . . . . Blo06g01038 Blo11g00962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005898 1 2 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01038 Blo_Chr06 FPKM 13.102975 13.528883 84.724709 82.411865 309.84967 280.36615 297.196503 42.754299 46.436836 44.941055