Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01057 ATGAAAATGGCGTTCAGACTTAGAACTCAGGCACCTAAGCCTCGCTCTCGTTCTGATGAATACGCCGACGTTTTGTGTGAGGTCTGTGCCTCTGGTGAGAGTCCTGGTGAGCTTCTTCTCTGCGACAAATGCGACCGAGGATACCACCTCTTTTGTCTCAAACCCATTCTCGTTTCTGTTCCTAAGGGCTCCTGGTTTTGTCCCTCCTGCTCCAACAACAAGCAGCTCATTCATTTCCCACTCATTCAAACCAAAATTGTTGATTTCTTCCGTATCCAAAGAAATGCATGTTCCATCAACATAGCAAAGGAAGATGGCAAAAAGAAGCGGAAACGGACAAGTAACTTAGTACTAGCGAAAAAGAAACGAAGACTTGTTGCATTCAACCCAAGTGATGATCCAACCAGAAGGCTAAAACAAATGGCATCACTGGCCACAGCGTTGATGGCTACCAAAACGGAGTTTAGTAACGAGCTTACTTACATTCCTGGCATGGCACCGAGGTCAGCTAATTGTGCGAATTTGGAGCAGGAAGGAATGCAGCAAGAGACTAGCAAATCAAATGCAAATATGTTACAGTTAATCTGCGTAGAAGGAATGTTTAGAAGAGAAACTTTGTTTTCACGACCTATTTCTAATGTAGTACTCTCAAAAGAGGACACTGAAACATTCGAGTTGTGCAGAAGAATGATGGAGAGAGGGGAATGGCCGCCCCTTATGGTTGTTTTTGATCCTCAAGAAGGGTTCACAGTCGAGGCAGATAGATTTATAAAGGATTTAACAATAATTACTGAATATACTGGAGATGTTGATTACTTGAAGAACCGTGAAAATGATGATGGTGATAGCATGATGACACTACTTTCTGCTTCCGATCCTTCAGAAAGCCTAGTCATTTGTCCTGATAAGTGCAGTAACATTGCACGATTCATTAATGGCATCAACAATCATACACCGAACGGTAAAAAGAAGCAAAATCTCAAGTGTGTGAGGTACAATGTGAATGGTGAGTGCAGGGTTTTACTGATTGCAAACAGAGACATAGCCAAGGGAGAGAGATTGTATTATGACTACAACGGGTATGAGCATGAATACCCCACTGAGCACTTCGTCTAG 1116 42.74 MKMAFRLRTQAPKPRSRSDEYADVLCEVCASGESPGELLLCDKCDRGYHLFCLKPILVSVPKGSWFCPSCSNNKQLIHFPLIQTKIVDFFRIQRNACSINIAKEDGKKKRKRTSNLVLAKKKRRLVAFNPSDDPTRRLKQMASLATALMATKTEFSNELTYIPGMAPRSANCANLEQEGMQQETSKSNANMLQLICVEGMFRRETLFSRPISNVVLSKEDTETFELCRRMMERGEWPPLMVVFDPQEGFTVEADRFIKDLTIITEYTGDVDYLKNRENDDGDSMMTLLSASDPSESLVICPDKCSNIARFINGINNHTPNGKKKQNLKCVRYNVNGECRVLLIANRDIAKGERLYYDYNGYEHEYPTEHFV 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33941124 33943541 + BLOR17640 Blo06g01057 62350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01057 371 Gene3D SET domain 110 371 IPR046341 -
Blo06g01057 371 SUPERFAMILY SET domain 228 359 IPR046341 -
Blo06g01057 371 SUPERFAMILY FYVE/PHD zinc finger 12 75 IPR011011 -
Blo06g01057 371 SMART PHD_3 25 71 IPR001965 -
Blo06g01057 371 ProSitePatterns Zinc finger PHD-type signature. 26 70 IPR019786 -
Blo06g01057 371 ProSiteProfiles SET domain profile. 237 359 IPR001214 GO:0005515
Blo06g01057 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 78 IPR013083 -
Blo06g01057 371 PANTHER HISTONE ACETYLTRANSFERASE 214 368 - -
Blo06g01057 371 Pfam PHD-finger 26 72 IPR019787 -
Blo06g01057 371 PANTHER HISTONE ACETYLTRANSFERASE 3 193 - -
Blo06g01057 371 CDD PHD_RSF1 25 70 - -
Blo06g01057 371 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 193 - -
Blo06g01057 371 CDD SET_ATXR5_6-like 234 371 - -
Blo06g01057 371 ProSiteProfiles Zinc finger PHD-type profile. 23 73 IPR019787 -
Blo06g01057 371 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 214 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01057 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101205046 520.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00085 Blo-Chr3:2836195 Blo06g01057 Blo-Chr6:33941124 3.14E-06 dispersed
Blo04g00967 Blo-Chr4:11952974 Blo06g01057 Blo-Chr6:33941124 2.15E-145 dispersed
Blo06g01057 Blo-Chr6:33941124 Blo16g00156 Blo-Chr16:3558556 1.03E-07 dispersed
Blo06g01057 Blo-Chr6:33941124 Blo12g01117 Blo-Chr12:28819648 1.58E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12532 PF00628 PHD 1.00E-12 CL0390 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01057 Blo_Chr06 FPKM 0.227063 0.0 5.078656 4.929505 2.436626 2.586136 2.578529 0.403381 0.486369 0.614803