Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01059 ATGGGAAGGCATAATCAGTTCTATCCAGTGAGGCAAGCACTGGATATTTTCTCTGATCAAGGGGCCAGAGAGCAGCGAAGTAAATCCAAGAAAATGGGGAACATGATGAATCATTTCTTCTATCCAATTCCAACATCACAAAAGCGGAAGATGGATTCTCTGCATATTGCTCCTCTTCTTTCATGCCCACCACCCTTTGACACTAAACTATCAAGAACTTGCCTAACTTCTGGAGTGATCACTCGCCTCTTTCAAATTCCTCTAGGCAGGAACTCTCGTTCAATCGGACGTTTAAAGCTTGCTGCTTCCATTTCGGGTGGAAGGGCGTGTGATGTTGGTGGGTACCCAGATGGGTCTTATGATATCGAAGACAATAACAAGGAAAAAAATGGTTTCATCATCGATTCTGAAAGAGATGCTTCTGGCTCTGTGGTTGGATTTAACTTGATTTCTAAACCTGGTGGAAATAATGAAGAAGCTGTCTTAAATAAAGACTTGAAAGCTGAAACAGGTGAAGATCAGGAGAAAAAGGAAGAAAAGCCCCACGTTAGAGTAACATACAATATTATCTTTGTAACCTCTGAAGCATCTCCGTACTCAAAGACGGGAGGCTTGGGAGATGTTTGTGGTTCCTTGCCGATAGCTTTAGCTGCCCGTGGACACAGAGTGATGGTAGTTTCTCCTAGATACCTCCACGGAACTCCCGCTGATAAAAAATTTGCCAGGGCTGCTGATTTGGATACTCGCATCAAGTTATATTGCTTTGGAGGAGAGCAAGAAGTAGCTTTCTTTCATGAATATAGAGAGGGTGTTGATTGGCTATTTGTGGATCACCCTTCATACCAAAGACCTGGAAATCCATATGGGGATATGTATGGTGCCTTTGGCGACAATCAGTTTCGGTTCACTTTACTTTGCCATGCTGCATGTGAAGCTCCTCTAGCGCTTCCTTTAGGTGGATTCACCTATGGGGAGAAATGTCTTTTCCTTGTCAATGACTGGCATGCAGGACTTGTGCCATTACTTTTGGCAGCCAAGTATAGGCCACATGGAATTTATAAGGATGCCAGAAGCATCCTCGTAATCCATAATCTTGCTCATCAGGGCGTTGAACCTGCAGTAACATACAAGAACATCGGACTTCCTCTTGAGTGGTATGGAGCCCTGGAATGGGTATTCCCAACCTGGGCAAGAACACATGCTCTCGACACTGGCAAAGCCGTCAATATTTTAAAGGGAGCGATTGTGACGGCTGATCGCATTGTGACAGTTAGCAAGGGTTATTCTTGGGAAATTACGACAGCAGAAGGTGGATATGGCTTACAAGGTTTATTAAGTAGCCGAAAAAGTGTTCTTGATGGGATTACAAATGGAATTGATGTTTTTGAATGGAATCCATCTTCAGATGAACATATTCCCTCCCATTACTCTGTTGAGGATCTTTCTGGAAAGGTTAAATGCAAGATTGCTCTGCAAAAGGAATTAGGTCTTCCCATTAAGCCCAGTTGCCCATTGATTGGATTCATTGGACGACTTGACTATCAAAAAGGCATTAACTTGATTCAGGCGGCTTTGCCTGAGCTTATGGAAGAAGACGTGCAATTTGGGGCATATGAATTTTTAGTGATGCCCTTTGGACTTACCAATGCACCATCTACATTTCAAGGTCTCATGAATGATGTATTCAGAAAATTTCTCCGTAAATTTGTGCTGGTTTTTTTTGAGCTCCGCGGATTTTTAGGCTTGACAGGCTATTACCGCATTACACCTTTTCAAATTGTTTATGGTCGATCACCACCTCCATTGGTTCGTTATGGCATGGGTTCTACACAGGTGGCTTCTGTTGAACATCTTTTGGAGGAGTGTGATGGAATTCTTGATGAATTGAAGTTACAACTAACAAAAGCACAAATTCTAATGAAAGCTTCAGCTGATTCTCAACGCCGTGATGTTCATTTTGCCATTGGCGATTTACTTAAAAAGACCATTGGCACTTCCATTGCTTCTACGGATATTCCATCTCAATTATCTTCTGATATGGAGCTTTTGGTGGAACCGCTTCATGTCCTTGATGTGCGACAGACTGCTATTGGTGGTAAAGAGTTCTTAGAAGTTATGCTTGGTTCTGGTGATCCACAGCTTGAATCCTGGATGAGAGCAACCGAGTCGGCTTATAGAGACAAGTTCCGAGGTTGGGTGGGATTTAATGTTCCAATTTCTCATAGGATAACAGCAGGCTGTGACATATTGTTAATGCCTTCGACATTCGAGCCATGCGGACTAAACCAATTGTACGCAATGAGATATGGAACTGTCCCAGTGGTTCATAACACCGGAGGACTACGGGATACGGTTTTGAATTTCGATCCGTATGCGCAGAAAGGCCACGGTTCAGGAACAGGGTGGACTTTTTCGCCGCTGACAAAAGAGAGTATGTTGGGGGCGTTGAGACTGGCGATCGTGACTTACCGGGATCACAAGTCTTCATGGGAGGGATTGATGAAGAGAGGTATGCTGAGGGATTGCACCTGGGAAAATGCTGCTATCCAGTATGAACAAGTGTTTCAATGGGCTTTCATTGATCCTCCCTACTGTAATTGA 2601 43.56 MGRHNQFYPVRQALDIFSDQGAREQRSKSKKMGNMMNHFFYPIPTSQKRKMDSLHIAPLLSCPPPFDTKLSRTCLTSGVITRLFQIPLGRNSRSIGRLKLAASISGGRACDVGGYPDGSYDIEDNNKEKNGFIIDSERDASGSVVGFNLISKPGGNNEEAVLNKDLKAETGEDQEKKEEKPHVRVTYNIIFVTSEASPYSKTGGLGDVCGSLPIALAARGHRVMVVSPRYLHGTPADKKFARAADLDTRIKLYCFGGEQEVAFFHEYREGVDWLFVDHPSYQRPGNPYGDMYGAFGDNQFRFTLLCHAACEAPLALPLGGFTYGEKCLFLVNDWHAGLVPLLLAAKYRPHGIYKDARSILVIHNLAHQGVEPAVTYKNIGLPLEWYGALEWVFPTWARTHALDTGKAVNILKGAIVTADRIVTVSKGYSWEITTAEGGYGLQGLLSSRKSVLDGITNGIDVFEWNPSSDEHIPSHYSVEDLSGKVKCKIALQKELGLPIKPSCPLIGFIGRLDYQKGINLIQAALPELMEEDVQFGAYEFLVMPFGLTNAPSTFQGLMNDVFRKFLRKFVLVFFELRGFLGLTGYYRITPFQIVYGRSPPPLVRYGMGSTQVASVEHLLEECDGILDELKLQLTKAQILMKASADSQRRDVHFAIGDLLKKTIGTSIASTDIPSQLSSDMELLVEPLHVLDVRQTAIGGKEFLEVMLGSGDPQLESWMRATESAYRDKFRGWVGFNVPISHRITAGCDILLMPSTFEPCGLNQLYAMRYGTVPVVHNTGGLRDTVLNFDPYAQKGHGSGTGWTFSPLTKESMLGALRLAIVTYRDHKSSWEGLMKRGMLRDCTWENAAIQYEQVFQWAFIDPPYCN 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33962532 33973444 - BLOR17642 Blo06g01059 62352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01059 866 Pfam Glycosyl transferases group 1 713 812 IPR001296 GO:0016757
Blo06g01059 866 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 705 865 - -
Blo06g01059 866 Gene3D - 528 575 IPR043128 -
Blo06g01059 866 Gene3D Glycogen Phosphorylase B; 705 840 - -
Blo06g01059 866 CDD GT5_Glycogen_synthase_DULL1-like 188 857 - -
Blo06g01059 866 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 125 535 - -
Blo06g01059 866 Hamap Glycogen synthase [glgA]. 187 858 IPR011835 GO:0004373
Blo06g01059 866 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 705 865 - -
Blo06g01059 866 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 125 535 - -
Blo06g01059 866 Gene3D Glycogen Phosphorylase B; 180 478 - -
Blo06g01059 866 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 701 858 - -
Blo06g01059 866 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 177 535 - -
Blo06g01059 866 Pfam Starch synthase catalytic domain 188 446 IPR013534 -
Blo06g01059 866 SUPERFAMILY DNA/RNA polymerases 534 641 IPR043502 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01059 K00703 glgA; starch synthase [EC:2.4.1.21] - qsu:112034608 691.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00840 Blo-Chr4:9121131 Blo06g01059 Blo-Chr6:33962532 4.06E-06 dispersed
Blo06g01059 Blo-Chr6:33962532 Blo18g00390 Blo-Chr18:4205690 7.77E-50 dispersed
Blo06g01059 Blo-Chr6:33962532 Blo17g00364 Blo-Chr17:3927833 1.50E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1036 Blo06g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0986 Cone5ag0692 . . . . . . . . . Bda15g00786 . Bpe12g00350 Bma08g00388 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016620 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01059 Blo_Chr06 FPKM 12.608591 11.826765 0.0 0.0 0.0 0.0 0.0 0.096345 0.079346 0.195369