Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01071 ATGGAAGCTCAGAGATGGATTTATAGCTTATGCTCGAACCCAAGCATTTCATCAGTTTCCAAACCCAAAACATCACTCTCTGTGATCCCATGTCCTTCTTCTTGTTCTTTTTCTAAATCACACAAATGGGTCTCATTCAAAGCAGTGCATTCTCTTTCACAAAACTCATCTGGCAAAAGAGACGAGTGTAGCAGTGTTACACATGTTTTAGAAGATGTTTCTTCGAATGATAACAATTCCAATGCTTTGATAAAAAGGAAAAGGCTTGCTGTTTTTGTTTCTGGTGGAGGTTCCAACTTCCGTTCCATTCATGAAGCATCTCTTCAGCAATTAATTCATGGAGATGTTGTGGTTTTGGTTACCAATAAACCAGATTGTGGAGGTGCACAGTATGCAAAAGCTAAGGGCATCCCTGTTGTTTTGTTTCCTAAATCTAAAGATGCACCTGATGGATTGTTGCCAGCAGATATTGTAGCTGTTCTTAGGACGTACAAGGTCGACTTGATCCTTCTAGCTGGATATCTCAAAATGATACCTGGCGAGTTGATTAGAGCTTACCCGAGGTCCATACTTAATATCCATCCATCTCTTCTTCCAGCATTTGGAGGCAAAGGTTATTATGGAATGAAAGTGCACAAAGCTGTCATTGCTTCAGGGGCAAGACACTCAGGTCCAAGTATACATTTTGTTGATGAGCATTACGACACTGGCGCCATACTTGCTCAAAGGGTTGTTCCTGTGCTTGCAAATGACTCGGCAGAAGACTTGGCTGCAAGAGTTCTCCAAAAGGAGCATAGTCTGTACGTGGAGGTAGTGGCAGCCTTGTGCGAAGAGCGGGTGAGCCCAAAGAGGTTCTTCCCAAACTCAGAAACTTTGCTCAGTTGCTGCAACTACATGGATGTTTTGTGGACTGTGGTCACTTGTTCTGGGTTTTTTGAGATGGCTTCGAAGCGGATCCTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCTACATCTTGCAGCGCTGGTCCAGTTGCCGAAGATATGTTTCACTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCATATGCTGGTGGTGTTTTCCTTGTCACAATTCATTTTCCTCCAGATTATCCATTCAAGCCTCCCAAGGTTGCATTCAGAACAAAAGTTTTCCACCCGAACATAAACAGCAATGGAAGTATCTGCCTTGATATATTGAAAGAGCAGTGGAGCCCTGCCCTTACCATCTCAAAGCATAGAAAAGTTTTGGGTCAAGCAATAATACCCCTGTTTCATGAAAAGCTTTGTAATGAGTTGTTTTATTCACTTCCATTACGTGTCATTTTCATCTTGTGTAAATTATTGTTATTATTATTATTATTTGTATTGCTATCAATATGCTCGCTGCTAACGGACCCAAATCCAGATGATCCATTGGTGCCAGAAATAGCTCACATGTACAAGACAGACAGGAACAAGTATGAAACGACTGCAAGGAGCTGGACCCAGAAATATGCAATGGGCTAG 1515 42.38 MEAQRWIYSLCSNPSISSVSKPKTSLSVIPCPSSCSFSKSHKWVSFKAVHSLSQNSSGKRDECSSVTHVLEDVSSNDNNSNALIKRKRLAVFVSGGGSNFRSIHEASLQQLIHGDVVVLVTNKPDCGGAQYAKAKGIPVVLFPKSKDAPDGLLPADIVAVLRTYKVDLILLAGYLKMIPGELIRAYPRSILNIHPSLLPAFGGKGYYGMKVHKAVIASGARHSGPSIHFVDEHYDTGAILAQRVVPVLANDSAEDLAARVLQKEHSLYVEVVAALCEERVSPKRFFPNSETLLSCCNYMDVLWTVVTCSGFFEMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKHRKVLGQAIIPLFHEKLCNELFYSLPLRVIFILCKLLLLLLLFVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34065200 34070177 + BLOR17654 Blo06g01071 62364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01071 504 SUPERFAMILY Formyltransferase 87 282 IPR036477 GO:0009058
Blo06g01071 504 SUPERFAMILY UBC-like 307 415 IPR016135 -
Blo06g01071 504 Hamap Phosphoribosylglycinamide formyltransferase [purN]. 88 278 IPR004607 GO:0004644|GO:0006189
Blo06g01071 504 Gene3D Ubiquitin Conjugating Enzyme 314 504 IPR016135 -
Blo06g01071 504 PANTHER BNAA01G32320D PROTEIN 316 414 - -
Blo06g01071 504 PANTHER BNAA01G32320D PROTEIN 458 501 - -
Blo06g01071 504 Gene3D - 67 286 - -
Blo06g01071 504 Pfam Formyl transferase 87 272 IPR002376 GO:0009058
Blo06g01071 504 CDD FMT_core_GART 88 275 IPR004607 GO:0004644|GO:0006189
Blo06g01071 504 SMART ubc_7 317 503 - -
Blo06g01071 504 TIGRFAM PurN: phosphoribosylglycinamide formyltransferase 87 280 IPR004607 GO:0004644|GO:0006189
Blo06g01071 504 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 387 402 IPR023313 -
Blo06g01071 504 CDD UBCc 316 498 IPR000608 -
Blo06g01071 504 Pfam Ubiquitin-conjugating enzyme 318 414 IPR000608 -
Blo06g01071 504 Pfam Ubiquitin-conjugating enzyme 457 497 IPR000608 -
Blo06g01071 504 SUPERFAMILY UBC-like 456 503 IPR016135 -
Blo06g01071 504 ProSitePatterns Phosphoribosylglycinamide formyltransferase active site. 224 247 IPR001555 -
Blo06g01071 504 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 314 503 IPR000608 -
Blo06g01071 504 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 316 414 - -
Blo06g01071 504 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 458 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01071 K00601 E2.1.2.2; phosphoribosylglycinamide formyltransferase [EC:2.1.2.2] - qsu:112007424 356.681
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g01071 Blo15g00101 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00420 Blo-Chr1:4731886 Blo06g01071 Blo-Chr6:34065200 8.90E-31 dispersed
Blo06g01071 Blo-Chr6:34065200 Blo16g00456 Blo-Chr16:18106360 1.68E-89 dispersed
Blo15g00101 Blo-Chr15:853914 Blo06g01071 Blo-Chr6:34065200 7.55E-101 wgd
Blo03g00153 Blo-Chr3:4063388 Blo06g01071 Blo-Chr6:34065200 7.90E-08 wgd
Blo06g01071 Blo-Chr6:34065200 Blo09g00044 Blo-Chr9:704628 5.15E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009927 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 2 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01071 Blo_Chr06 FPKM 45.11747 41.873425 47.144848 45.697849 21.993057 20.687622 19.406246 72.764587 73.03434 78.355865