Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01076 ATGGGTGATATTTTGGCAGAGTTTTTTGGCGACAACGAATTCGGCGACACTACGAACTTGGTCGGAGACGACATTTTAAGCATTTTGGAGAGCTTGGACGACGTGGAGGAGTTTCCTGCAACGAACGAAAGGTTCAACAATGGCGGAACCTCCGCTCAGAAGCCTTCTTCCTCAAATGCTTTGCTGTATCTTTCAGAAACTGAGTTTGAAAACTCACCAAAAACCAAGAGGTTGAAGACGACGAAGGAGGAAGCTAATCATCCGGATGGGCAACAGAGAATTTCTCATATTACAGTGGAGAGAAATAGAAGAAAGCAAATGAACGACCATTTGTCTGTTTTGAGGTCTCTAATGCCATGCTTTTACGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGGGTGATAGATTATATCAACGAGTTGCAGCAAGTTCTTCAGGCATTAGAGGCAAAGAAGCAAAGAAAAGTTTACAGTGAAATTTTAAGTCCTAGACTGATTTCACCTTCACCACTCAGCCCTAGAAAACCAGCACTAAGCCCCAGAATCCCCTTGCCAATTAGCCCAAGAACTCCTCAGCCCACTAGCCCTTACAAACCTAAGCTGCAAAAACCTTTCCTTTCTCCAACAATGGCGGCGGTTAATTCCGTTGAGCCTTCGCCTTCTTCTTCATCTACGTCTACTTCTGGTGCAGAGAGTTTTAATGAGCTGGTTGCTAATTGCAAATCTAGCGTGGCTGAAGTTGAGGTTAAGTTTTCTGCTCCTAATGTTCTCTTGAAGACTGTTTCTCCTAAGATTCCTGGACAAGCCATGAAAATTATTTCTGCTCTGGAAAATCTCTCCCTTGAGATTCTTCAAGTTAATGTCAATACTGTTGATGAAACCATGGTTAATTCCTTCACCATCAAGCTTACTGAGGAGGGAGGCGCAGAGGTGGGCCTGATTAGCATCATTTATAGACGACTGTCGAAATTTGTGCAAGGAAGAAGCTCTCACCGCAATCCAAGAGCTTTTCTCAAGCAAATTACCATGGAAGTTGTGTCTATTTCTAGCTCAGCAGCTCGGACTGCAGTAGGGATAAGCACAAAGCTCTTGACTCACAGGACAAACTTGAAAAAGCCCTTAACTGTTGTAGCATTCAAAGCCAACAAAACCAATTACACGACACTGATTTCTCCTATGGAGAAAGTCTCTTTGCCTGTGGAACCGAATTCAAGCAGCCCGAAGAGAATCGGGAAGGCTAAGAAATCTTCTAAAAGAGTGAAAAGTGTTTTTACAGATGAATTTCCTTCCTGTACACTGGATTTGGACTACAATGAAGCTGCTGCTAAACTTGAAAGTATATTCAAGCTAAGCCCTACGACTGACCCTTCTGTAGCAGACGAAGATGTGAGTGCACCGAGGAAGGGGAAGAAAAGAGGGAAGAGGATTGGGGAAGATGATGATAATCTATCCGGGAAGAGTGTAAATGATAATGTGGTGAGAAGCCAAACTAAGAAATCTAGGCGATTGAATCTTGATAATAGAATTGCTCTTCAAAGTAGAAAGGATGAGATGAAGGTTAATTCCATCCCGAAGAAAAAAAATCGAGAGGACGAAAATAAGAAGATTGACAGGCTTGTTAGAGAATACTCAGTTTCGACCGATCTGGTTAGCTTGGACTGGAAAAAAATGAAGATGCCTCCCGTTCTTCCATCATCAGAACATGCTTGGTTATTCAAGTTGATGCAGCCTATGAAGGCTCTTCTGCAAGTGAAAGAGGATTTGCATAAACAACTTGAAAGAGAACCTACTGAAGGTGAATTAGCCAAGGCGGTGGGTATGGATGTGATTCAAGTGAGGAGAAAGCTGGAGGTTGGTCATGCTGCTAGAAATAAGCTTATTAAGCACAATCTTCGACTCGTGTTGTTCGTAATCAACAAATACTTCGAGGATTTTGCAAATGGCACTAAGTTTCAAGACCTGTGTCAAGCTGGAGTGAAGGGACTCATTACAGCCATTGATCGATTTGAGTTCAAGAGAAAATTTCGGCTTTCGACTTATGCTCTTTTCTGGATCAGGCATGCTATTATGCGATCCATGACTCTCTCGAGCTTCACTCGGGTCTCGTTTGGCCTAGATTCGGTCAGAGTAGAAATTCAAAAGGCCAAAATGGAGTTATTGTTCAGGCTTAAAAGATTACCAACGGAAGATGAGATAATAGTAAAAGTTGGGATTTCATCTGAGAGATACCATGAAGTAATGAGAGCCTCAAAACCTGTTTTCTCTCTCCAATCAAAGCATGCCACAACTAATGAAGAGTACATTAATGGCATATCTGATGTTGATGGTGCCGGAGGTGACAATCGAAGGCAAGCTGCTCTCCTCCGGCTTGCTCTCGATGATGTGCTTGATTCTTTGAAGCCCAAGGAAAGCTTGGTAATCAGACAGAGATATGGCCTTGATGGAAAAGGTGACAGAACAATGGGAGAAATCGCCGGAAACTTAAACATTTCGAGAGAAATGGTTCGGAAACACGAAGTTAAGGCTCTCATGAAGCTCAAGCATCCGGCTCGAGTCGACTATCTTCGCCGATACGTAATCTGA 2586 42.88 MGDILAEFFGDNEFGDTTNLVGDDILSILESLDDVEEFPATNERFNNGGTSAQKPSSSNALLYLSETEFENSPKTKRLKTTKEEANHPDGQQRISHITVERNRRKQMNDHLSVLRSLMPCFYVKRGDQASIIGGVIDYINELQQVLQALEAKKQRKVYSEILSPRLISPSPLSPRKPALSPRIPLPISPRTPQPTSPYKPKLQKPFLSPTMAAVNSVEPSPSSSSTSTSGAESFNELVANCKSSVAEVEVKFSAPNVLLKTVSPKIPGQAMKIISALENLSLEILQVNVNTVDETMVNSFTIKLTEEGGAEVGLISIIYRRLSKFVQGRSSHRNPRAFLKQITMEVVSISSSAARTAVGISTKLLTHRTNLKKPLTVVAFKANKTNYTTLISPMEKVSLPVEPNSSSPKRIGKAKKSSKRVKSVFTDEFPSCTLDLDYNEAAAKLESIFKLSPTTDPSVADEDVSAPRKGKKRGKRIGEDDDNLSGKSVNDNVVRSQTKKSRRLNLDNRIALQSRKDEMKVNSIPKKKNREDENKKIDRLVREYSVSTDLVSLDWKKMKMPPVLPSSEHAWLFKLMQPMKALLQVKEDLHKQLEREPTEGELAKAVGMDVIQVRRKLEVGHAARNKLIKHNLRLVLFVINKYFEDFANGTKFQDLCQAGVKGLITAIDRFEFKRKFRLSTYALFWIRHAIMRSMTLSSFTRVSFGLDSVRVEIQKAKMELLFRLKRLPTEDEIIVKVGISSERYHEVMRASKPVFSLQSKHATTNEEYINGISDVDGAGGDNRRQAALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTMGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVI 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34095945 34102905 + BLOR17659 Blo06g01076 62369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01076 861 CDD bHLH_AtFAMA_like 94 165 - -
Blo06g01076 861 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Blo06g01076 861 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 786 859 IPR013324 -
Blo06g01076 861 Pfam Sigma-70, region 4 796 849 IPR007630 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 Coils Coil 135 155 - -
Blo06g01076 861 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 345 861 - -
Blo06g01076 861 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 160 IPR036638 GO:0046983
Blo06g01076 861 SMART finulus 97 148 IPR011598 GO:0046983
Blo06g01076 861 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 345 861 - -
Blo06g01076 861 MobiDBLite consensus disorder prediction 170 199 - -
Blo06g01076 861 Gene3D - 617 695 - -
Blo06g01076 861 MobiDBLite consensus disorder prediction 454 502 - -
Blo06g01076 861 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 708 765 IPR013324 -
Blo06g01076 861 CDD Sigma70_r4 790 848 - -
Blo06g01076 861 Pfam Sigma-70 region 3 711 766 IPR007624 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 545 694 IPR013325 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 623 849 IPR014284 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 Gene3D - 82 156 IPR036638 GO:0046983
Blo06g01076 861 PRINTS Major sigma-70 factor signature 678 686 IPR000943 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 PRINTS Major sigma-70 factor signature 800 812 IPR000943 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 PRINTS Major sigma-70 factor signature 821 836 IPR000943 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 PRINTS Major sigma-70 factor signature 654 667 IPR000943 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 PRINTS Major sigma-70 factor signature 836 847 IPR000943 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 MobiDBLite consensus disorder prediction 462 486 - -
Blo06g01076 861 Gene3D - 705 852 - -
Blo06g01076 861 Pfam Sigma-70 region 2 627 692 IPR007627 GO:0003700|GO:0006352|GO:0006355
Blo06g01076 861 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Blo06g01076 861 MobiDBLite consensus disorder prediction 169 202 - -
Blo06g01076 861 Gene3D - 574 616 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00230 Blo-Chr2:2182195 Blo06g01076 Blo-Chr6:34095945 1.59E-42 dispersed
Blo06g01076 Blo-Chr6:34095945 Blo16g00610 Blo-Chr16:24691249 2.92E-35 dispersed
Blo17g00058 Blo-Chr17:418189 Blo06g01076 Blo-Chr6:34095945 4.81E-20 dispersed
Blo06g01076 Blo-Chr6:34095945 Blo07g00350 Blo-Chr7:5558353 3.38E-57 wgd
Blo06g01076 Blo-Chr6:34095945 Blo09g00040 Blo-Chr9:563293 1.90E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12536 PF04539 Sigma70_r3 4.10E-09 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01076 K03093 - cpap:110823190 696.427