Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo06g01076 | ATGGGTGATATTTTGGCAGAGTTTTTTGGCGACAACGAATTCGGCGACACTACGAACTTGGTCGGAGACGACATTTTAAGCATTTTGGAGAGCTTGGACGACGTGGAGGAGTTTCCTGCAACGAACGAAAGGTTCAACAATGGCGGAACCTCCGCTCAGAAGCCTTCTTCCTCAAATGCTTTGCTGTATCTTTCAGAAACTGAGTTTGAAAACTCACCAAAAACCAAGAGGTTGAAGACGACGAAGGAGGAAGCTAATCATCCGGATGGGCAACAGAGAATTTCTCATATTACAGTGGAGAGAAATAGAAGAAAGCAAATGAACGACCATTTGTCTGTTTTGAGGTCTCTAATGCCATGCTTTTACGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGGGTGATAGATTATATCAACGAGTTGCAGCAAGTTCTTCAGGCATTAGAGGCAAAGAAGCAAAGAAAAGTTTACAGTGAAATTTTAAGTCCTAGACTGATTTCACCTTCACCACTCAGCCCTAGAAAACCAGCACTAAGCCCCAGAATCCCCTTGCCAATTAGCCCAAGAACTCCTCAGCCCACTAGCCCTTACAAACCTAAGCTGCAAAAACCTTTCCTTTCTCCAACAATGGCGGCGGTTAATTCCGTTGAGCCTTCGCCTTCTTCTTCATCTACGTCTACTTCTGGTGCAGAGAGTTTTAATGAGCTGGTTGCTAATTGCAAATCTAGCGTGGCTGAAGTTGAGGTTAAGTTTTCTGCTCCTAATGTTCTCTTGAAGACTGTTTCTCCTAAGATTCCTGGACAAGCCATGAAAATTATTTCTGCTCTGGAAAATCTCTCCCTTGAGATTCTTCAAGTTAATGTCAATACTGTTGATGAAACCATGGTTAATTCCTTCACCATCAAGCTTACTGAGGAGGGAGGCGCAGAGGTGGGCCTGATTAGCATCATTTATAGACGACTGTCGAAATTTGTGCAAGGAAGAAGCTCTCACCGCAATCCAAGAGCTTTTCTCAAGCAAATTACCATGGAAGTTGTGTCTATTTCTAGCTCAGCAGCTCGGACTGCAGTAGGGATAAGCACAAAGCTCTTGACTCACAGGACAAACTTGAAAAAGCCCTTAACTGTTGTAGCATTCAAAGCCAACAAAACCAATTACACGACACTGATTTCTCCTATGGAGAAAGTCTCTTTGCCTGTGGAACCGAATTCAAGCAGCCCGAAGAGAATCGGGAAGGCTAAGAAATCTTCTAAAAGAGTGAAAAGTGTTTTTACAGATGAATTTCCTTCCTGTACACTGGATTTGGACTACAATGAAGCTGCTGCTAAACTTGAAAGTATATTCAAGCTAAGCCCTACGACTGACCCTTCTGTAGCAGACGAAGATGTGAGTGCACCGAGGAAGGGGAAGAAAAGAGGGAAGAGGATTGGGGAAGATGATGATAATCTATCCGGGAAGAGTGTAAATGATAATGTGGTGAGAAGCCAAACTAAGAAATCTAGGCGATTGAATCTTGATAATAGAATTGCTCTTCAAAGTAGAAAGGATGAGATGAAGGTTAATTCCATCCCGAAGAAAAAAAATCGAGAGGACGAAAATAAGAAGATTGACAGGCTTGTTAGAGAATACTCAGTTTCGACCGATCTGGTTAGCTTGGACTGGAAAAAAATGAAGATGCCTCCCGTTCTTCCATCATCAGAACATGCTTGGTTATTCAAGTTGATGCAGCCTATGAAGGCTCTTCTGCAAGTGAAAGAGGATTTGCATAAACAACTTGAAAGAGAACCTACTGAAGGTGAATTAGCCAAGGCGGTGGGTATGGATGTGATTCAAGTGAGGAGAAAGCTGGAGGTTGGTCATGCTGCTAGAAATAAGCTTATTAAGCACAATCTTCGACTCGTGTTGTTCGTAATCAACAAATACTTCGAGGATTTTGCAAATGGCACTAAGTTTCAAGACCTGTGTCAAGCTGGAGTGAAGGGACTCATTACAGCCATTGATCGATTTGAGTTCAAGAGAAAATTTCGGCTTTCGACTTATGCTCTTTTCTGGATCAGGCATGCTATTATGCGATCCATGACTCTCTCGAGCTTCACTCGGGTCTCGTTTGGCCTAGATTCGGTCAGAGTAGAAATTCAAAAGGCCAAAATGGAGTTATTGTTCAGGCTTAAAAGATTACCAACGGAAGATGAGATAATAGTAAAAGTTGGGATTTCATCTGAGAGATACCATGAAGTAATGAGAGCCTCAAAACCTGTTTTCTCTCTCCAATCAAAGCATGCCACAACTAATGAAGAGTACATTAATGGCATATCTGATGTTGATGGTGCCGGAGGTGACAATCGAAGGCAAGCTGCTCTCCTCCGGCTTGCTCTCGATGATGTGCTTGATTCTTTGAAGCCCAAGGAAAGCTTGGTAATCAGACAGAGATATGGCCTTGATGGAAAAGGTGACAGAACAATGGGAGAAATCGCCGGAAACTTAAACATTTCGAGAGAAATGGTTCGGAAACACGAAGTTAAGGCTCTCATGAAGCTCAAGCATCCGGCTCGAGTCGACTATCTTCGCCGATACGTAATCTGA | 2586 | 42.88 | MGDILAEFFGDNEFGDTTNLVGDDILSILESLDDVEEFPATNERFNNGGTSAQKPSSSNALLYLSETEFENSPKTKRLKTTKEEANHPDGQQRISHITVERNRRKQMNDHLSVLRSLMPCFYVKRGDQASIIGGVIDYINELQQVLQALEAKKQRKVYSEILSPRLISPSPLSPRKPALSPRIPLPISPRTPQPTSPYKPKLQKPFLSPTMAAVNSVEPSPSSSSTSTSGAESFNELVANCKSSVAEVEVKFSAPNVLLKTVSPKIPGQAMKIISALENLSLEILQVNVNTVDETMVNSFTIKLTEEGGAEVGLISIIYRRLSKFVQGRSSHRNPRAFLKQITMEVVSISSSAARTAVGISTKLLTHRTNLKKPLTVVAFKANKTNYTTLISPMEKVSLPVEPNSSSPKRIGKAKKSSKRVKSVFTDEFPSCTLDLDYNEAAAKLESIFKLSPTTDPSVADEDVSAPRKGKKRGKRIGEDDDNLSGKSVNDNVVRSQTKKSRRLNLDNRIALQSRKDEMKVNSIPKKKNREDENKKIDRLVREYSVSTDLVSLDWKKMKMPPVLPSSEHAWLFKLMQPMKALLQVKEDLHKQLEREPTEGELAKAVGMDVIQVRRKLEVGHAARNKLIKHNLRLVLFVINKYFEDFANGTKFQDLCQAGVKGLITAIDRFEFKRKFRLSTYALFWIRHAIMRSMTLSSFTRVSFGLDSVRVEIQKAKMELLFRLKRLPTEDEIIVKVGISSERYHEVMRASKPVFSLQSKHATTNEEYINGISDVDGAGGDNRRQAALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTMGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVI | 861 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 34095945 | 34102905 | + | BLOR17659 | Blo06g01076 | 62369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo06g01076 | 861 | CDD | bHLH_AtFAMA_like | 94 | 165 | - | - | |
Blo06g01076 | 861 | Pfam | Helix-loop-helix DNA-binding domain | 92 | 143 | IPR011598 | GO:0046983 | |
Blo06g01076 | 861 | SUPERFAMILY | Sigma3 and sigma4 domains of RNA polymerase sigma factors | 786 | 859 | IPR013324 | - | |
Blo06g01076 | 861 | Pfam | Sigma-70, region 4 | 796 | 849 | IPR007630 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | Coils | Coil | 135 | 155 | - | - | |
Blo06g01076 | 861 | PANTHER | RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL | 345 | 861 | - | - | |
Blo06g01076 | 861 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 90 | 160 | IPR036638 | GO:0046983 | |
Blo06g01076 | 861 | SMART | finulus | 97 | 148 | IPR011598 | GO:0046983 | |
Blo06g01076 | 861 | PANTHER | RNA POLYMERASE SIGMA FACTOR RPO | 345 | 861 | - | - | |
Blo06g01076 | 861 | MobiDBLite | consensus disorder prediction | 170 | 199 | - | - | |
Blo06g01076 | 861 | Gene3D | - | 617 | 695 | - | - | |
Blo06g01076 | 861 | MobiDBLite | consensus disorder prediction | 454 | 502 | - | - | |
Blo06g01076 | 861 | SUPERFAMILY | Sigma3 and sigma4 domains of RNA polymerase sigma factors | 708 | 765 | IPR013324 | - | |
Blo06g01076 | 861 | CDD | Sigma70_r4 | 790 | 848 | - | - | |
Blo06g01076 | 861 | Pfam | Sigma-70 region 3 | 711 | 766 | IPR007624 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | SUPERFAMILY | Sigma2 domain of RNA polymerase sigma factors | 545 | 694 | IPR013325 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | TIGRFAM | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family | 623 | 849 | IPR014284 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | Gene3D | - | 82 | 156 | IPR036638 | GO:0046983 | |
Blo06g01076 | 861 | PRINTS | Major sigma-70 factor signature | 678 | 686 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | PRINTS | Major sigma-70 factor signature | 800 | 812 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | PRINTS | Major sigma-70 factor signature | 821 | 836 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | PRINTS | Major sigma-70 factor signature | 654 | 667 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | PRINTS | Major sigma-70 factor signature | 836 | 847 | IPR000943 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | MobiDBLite | consensus disorder prediction | 462 | 486 | - | - | |
Blo06g01076 | 861 | Gene3D | - | 705 | 852 | - | - | |
Blo06g01076 | 861 | Pfam | Sigma-70 region 2 | 627 | 692 | IPR007627 | GO:0003700|GO:0006352|GO:0006355 | |
Blo06g01076 | 861 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 91 | 142 | IPR011598 | GO:0046983 | |
Blo06g01076 | 861 | MobiDBLite | consensus disorder prediction | 169 | 202 | - | - | |
Blo06g01076 | 861 | Gene3D | - | 574 | 616 | IPR036388 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo02g00230 | Blo-Chr2:2182195 | Blo06g01076 | Blo-Chr6:34095945 | 1.59E-42 | dispersed | |
Blo06g01076 | Blo-Chr6:34095945 | Blo16g00610 | Blo-Chr16:24691249 | 2.92E-35 | dispersed | |
Blo17g00058 | Blo-Chr17:418189 | Blo06g01076 | Blo-Chr6:34095945 | 4.81E-20 | dispersed | |
Blo06g01076 | Blo-Chr6:34095945 | Blo07g00350 | Blo-Chr7:5558353 | 3.38E-57 | wgd | |
Blo06g01076 | Blo-Chr6:34095945 | Blo09g00040 | Blo-Chr9:563293 | 1.90E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
12536 | PF04539 | Sigma70_r3 | 4.10E-09 | CL0123 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo06g01076 | K03093 | - | cpap:110823190 | 696.427 |