Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01077 ATGAAAACTTCAGTTACGGGTACATGGAAGCACAATCGGTGGAAACACAACTTTAGACTTCTTTCCGTTCTCTCCCAGTTTTCCAAGACTTCAGATTCAAACGTTGTTTCTGCCAATATTTCCATCACCAAGCTTGCGAAGGATGGGCAACTCGATCTTGCTAGGAGCTTGTTCGACAAAATGCCTCTTAGAACTGTTGTCTCGTGGAATTCAATGATTTCTGGGTATTCCAAATGGGGGAAATATAAAGAAGCTCTCAGTCTTCTTTCTGCGATGCATCAAAGCAATGTCAAACTCAATGAGACCACTTTCTCTACTGTATTCAGTGTTTGCTCCCATTCAAAGTCGTTAAGCGAGGGAAAACTACTTCACTGTTTAGTTTTGAAATCTGGTTCAGCTAAATTCGAGCTCGTGGGTTGTTCATTACTGTATCTATATTCTAGTTCTTTTAAAATTAAAAGTGCCGAGCGGGTGTTTGAAGAGTTGTACGAGGAAAATGTGTTGCTTTGGAGTTTGATGCTTGTGGGATATGTGCAATGTAACTTGATGGCTGAGGGTTTCGATCTTTTCATGAAAATTCCTAATAGGGATGTCGTCGCATGGACCTCATTGATTTCTGGATATGCTAGGAGCGACCATGAGAGAGAAAGGGCGTTAGAGTTGTTCTGGCGGATGAGACAGAGTGGTGAGGCTTTACCCAATGAGTTTACCTTTGACTGTGTTTTAAGGGTGTGTGGGAAACTTGGAATTTTAAGTGAGGGAAAGGTTGTTCATGGGCTTCTGATTAAATTCGGATTTGAGTTTGATAAATCAATTGGAGGCTCTTTGATTGAATTTTATTCTGAATGTGAAGCTATTGATGATGCTCAGAAAGTATGTAAGGAATCAATTAGATTATTTGAAAGAATGACGAATAAAACTATCATTTCCTCTAATACTATGATCTCAGTTTATTCCAGGAATTGTGAACTTGATAAAGCCGTGAAACTTTTCGAAGAAACTAAAGGAGAAGGAAATACCATAACATGGAATTCAATGATGTCCGGCTATGTTCAGAGTAATGAACATGAAGAAGCATTCAAACTATATGTCACGATGTGTAGATTGAAAATAGGCAGTTCCAGATCAACATTTTCCGCTCTACTTCATGCTTGTACATGTTTAGGGTCACTTCAACTTGGTCAATTACTTCATGGCCGGGTCGTGAAAACTCCATTTGAATCCAATGTTTATGTGGGAACTTCTCTGATAGATATGTACTCAAAATGTGGAAGCATATCGGATGCTCAAAAATGTTTCACTAGTGTCTGTTATCCAAATGTTGCTGCTTGTACGGCTCTTATTAATGCATATGTACATCATGGGCTTGGTATTAAGGCATTTTCACTCTTTGAAAATATGATATCGCAAGGAATAGTTCCAAATGCAGCAACTATTTTAGGAATTCTTTCTGCTTGTGGCCGTGCTGGTTTAATAAATGAAGGGATGAAGATTTTTAATGCAATAGAGAATAATTATGGTGTAGTTCCAACTTTAGAACACTATGCCTGTGTAGTTGATCTTCTCGGTAGATCAGGCTATTTGCGAGAAGCTGAAGATTTTATAAAAAATATGCCGATTGAAGCAGATGGTGTGATCTGGGGAGCTTTGCTCAATGCTTGTTGGTTTTGGACGGACATGGAATTGGGGGAGAGGGTGGCTGCGAAGATGTTAGCTTTGAAGCCCATTCCAATATCAGCTTATGTAATCATGTCCAACATTTATGCTGTTTTAGGAAAATGGGTGGAGAAGATTAATGTAAGGAATACTTTGAAAAGCTTGGAAGTGAAAAAGAGTCGAGGTTGTAGTTGGCTTGAACTGAATAGTGGAATTCATGTGTTCTATGTCGAAGATAGAGGCCATCCTTGTTGCAATCTGATACATGAAACTTTGGAGCATCTAACCACGAATATAAATTATATTACTCACTGTGAATATTTTTCCCTGAAGTTGTAG 1995 38.7 MKTSVTGTWKHNRWKHNFRLLSVLSQFSKTSDSNVVSANISITKLAKDGQLDLARSLFDKMPLRTVVSWNSMISGYSKWGKYKEALSLLSAMHQSNVKLNETTFSTVFSVCSHSKSLSEGKLLHCLVLKSGSAKFELVGCSLLYLYSSSFKIKSAERVFEELYEENVLLWSLMLVGYVQCNLMAEGFDLFMKIPNRDVVAWTSLISGYARSDHERERALELFWRMRQSGEALPNEFTFDCVLRVCGKLGILSEGKVVHGLLIKFGFEFDKSIGGSLIEFYSECEAIDDAQKVCKESIRLFERMTNKTIISSNTMISVYSRNCELDKAVKLFEETKGEGNTITWNSMMSGYVQSNEHEEAFKLYVTMCRLKIGSSRSTFSALLHACTCLGSLQLGQLLHGRVVKTPFESNVYVGTSLIDMYSKCGSISDAQKCFTSVCYPNVAACTALINAYVHHGLGIKAFSLFENMISQGIVPNAATILGILSACGRAGLINEGMKIFNAIENNYGVVPTLEHYACVVDLLGRSGYLREAEDFIKNMPIEADGVIWGALLNACWFWTDMELGERVAAKMLALKPIPISAYVIMSNIYAVLGKWVEKINVRNTLKSLEVKKSRGCSWLELNSGIHVFYVEDRGHPCCNLIHETLEHLTTNINYITHCEYFSLKL 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34108905 34111067 - BLOR17660 Blo06g01077 62370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01077 664 Pfam E motif 558 619 IPR046848 -
Blo06g01077 664 PANTHER BNACNNG15330D PROTEIN 397 652 - -
Blo06g01077 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 232 IPR002885 -
Blo06g01077 664 PANTHER - 180 316 - -
Blo06g01077 664 Pfam PPR repeat 42 62 IPR002885 -
Blo06g01077 664 Pfam PPR repeat 170 196 IPR002885 -
Blo06g01077 664 Pfam PPR repeat 414 433 IPR002885 -
Blo06g01077 664 Pfam PPR repeat 310 338 IPR002885 -
Blo06g01077 664 PANTHER - 30 192 - -
Blo06g01077 664 TIGRFAM PPR: pentatricopeptide repeat domain 341 371 IPR002885 -
Blo06g01077 664 TIGRFAM PPR: pentatricopeptide repeat domain 312 335 IPR002885 -
Blo06g01077 664 TIGRFAM PPR: pentatricopeptide repeat domain 443 476 IPR002885 -
Blo06g01077 664 TIGRFAM PPR: pentatricopeptide repeat domain 67 101 IPR002885 -
Blo06g01077 664 Pfam PPR repeat family 339 385 IPR002885 -
Blo06g01077 664 Pfam PPR repeat family 65 111 IPR002885 -
Blo06g01077 664 Pfam PPR repeat family 439 486 IPR002885 -
Blo06g01077 664 PANTHER BNACNNG15330D PROTEIN 30 192 - -
Blo06g01077 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Blo06g01077 664 Pfam Pentatricopeptide repeat domain 197 247 IPR002885 -
Blo06g01077 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Blo06g01077 664 Gene3D Tetratricopeptide repeat domain 136 292 IPR011990 GO:0005515
Blo06g01077 664 Gene3D Tetratricopeptide repeat domain 415 638 IPR011990 GO:0005515
Blo06g01077 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 65 99 IPR002885 -
Blo06g01077 664 PANTHER - 397 652 - -
Blo06g01077 664 PANTHER - 306 451 - -
Blo06g01077 664 Gene3D Tetratricopeptide repeat domain 293 393 IPR011990 GO:0005515
Blo06g01077 664 Gene3D Tetratricopeptide repeat domain 6 122 IPR011990 GO:0005515
Blo06g01077 664 PANTHER BNACNNG15330D PROTEIN 180 316 - -
Blo06g01077 664 PANTHER BNACNNG15330D PROTEIN 306 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01077 - - - cmax:111490947 845.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01077 Blo-Chr6:34108905 Blo07g00182 Blo-Chr7:2293327 4.12E-06 dispersed
Blo06g01077 Blo-Chr6:34108905 Blo13g00879 Blo-Chr13:31332637 2.60E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01077 Blo_Chr06 FPKM 38.794903 37.212227 2.052954 1.957732 35.670006 42.233192 36.612076 2.781189 2.716051 3.370284