Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01109 ATGGAGGTTTTCTCAACTCTGTTTGATTCTAATTGTGGGTCTTCGGGAAGAAGTGATATTACCGGGAGGGGGAATTTTTCCGACGGGGAGCTTATACTGGCGGCGAGCTCTCCGAAGAAGAGAGCAGGAAGGAAGAAGTTTAAGGAGACGAGGCACCCAGTTTTCCGGGGAGTGAGGAGGAGGAACTCCGGCAAGTGGGTTTGTGAAGTAAGAGAGCCGACTAAGCAGGATAGGATTTGGCTTGGGACTTTTCCGACGGTGGAAATGGCGGCCAGAGCCCATGACGTGGCAGCAATTGCTCTCCGCGGCCGGGCCGCTTGCTTAAACTTCGCAGACTCTGCATGGCGGCTTCCTGTGCCGGCATCGACAGAGGCCAAGGATATTCAGAAGGCAGCGGCGGAAGCTGCAGAGGCATTTCGACCACGGCCAGAGCATGAGGAGTTCAATCCCGATAAATTCCCGGCAGAAGCGCCGGAGAATGTCTTCTACATGGACGAGGAGGCTGTTTTCGGGATGCCAGGGTTGCTGGCAAACATGGCGGAGGGAATGCTATTGCCTCCGCCTCAGGGGGAGGAAGGGAGAGTTGATGACGCCGATTTCCACGCTGACGTGTCATTATGGAGTTATTCTATATAA 636 54.56 MEVFSTLFDSNCGSSGRSDITGRGNFSDGELILAASSPKKRAGRKKFKETRHPVFRGVRRRNSGKWVCEVREPTKQDRIWLGTFPTVEMAARAHDVAAIALRGRAACLNFADSAWRLPVPASTEAKDIQKAAAEAAEAFRPRPEHEEFNPDKFPAEAPENVFYMDEEAVFGMPGLLANMAEGMLLPPPQGEEGRVDDADFHADVSLWSYSI 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34509872 34510507 - BLOR17692 Blo06g01109 62402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01109 211 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Blo06g01109 211 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Blo06g01109 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 211 IPR045277 GO:0003700
Blo06g01109 211 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Blo06g01109 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 19 211 - -
Blo06g01109 211 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Blo06g01109 211 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Blo06g01109 211 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Blo06g01109 211 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Blo06g01109 211 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01109 Blo-Chr6:34509872 Blo09g00093 Blo-Chr9:1750154 6.84E-71 dispersed
Blo06g01109 Blo-Chr6:34509872 Blo06g01111 Blo-Chr6:34529809 2.40E-37 proximal
Blo06g01109 Blo-Chr6:34509872 Blo06g01110 Blo-Chr6:34522694 1.58E-152 tandem
Blo15g00153 Blo-Chr15:1552776 Blo06g01109 Blo-Chr6:34509872 2.86E-113 wgd
Blo03g00192 Blo-Chr3:4603081 Blo06g01109 Blo-Chr6:34509872 1.37E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12538 PF00847 AP2 2.50E-14 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01109 - K09286 fve:101302987 273.863