Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01115 ATGGGTAATTCATTTGGGTGTTCTGCGTCGGGGGAGAGACTGGTATCAGCTGCAAGAGATGGGGATTTGGTGGAGGCCAAGATGTTATTGGATTTCAACCCTTGCTTGGCCAAGTACTCCACTTTCGGCGGCCTCAATTCTCCTCTCCATTTTGCTGCTGCCAAGGGCCACAATGAGATTGTCGCCCTGTTGCTAGAGAATGGAGCTGATGTTAATTCCAGAAATTATTGCGGCCAGACAGCTTTGATGCAAGCTTGTCGATACGGACACTGGGAAGTTATACAAACTCTTCTTCTTTTTCGGTGTAATGCTACAAGAGCAGACTACCTGAGCGGCCGGACTGCTCTTCATTTTGCTGCATTAAATGGTCATGTAAGATGCATGAGACTTGTTGTAGCTGATTTCATTCCGAGTGCTCCTTATGAAGCGATAAATGTTAAGATAAACGGCGACAGAGCTGGTGATGTCAAAAACAAATCTGAACTAAGTGTGTTGTCGAAATTTGTAAATAAGGCAGCCGATGGAGGTATCACTGCTCTTCATATGGCGGCCTTAAACAGGTACTTCGATTGTGTTCAACTCTTGCTCGATCTTCAGGCCAACGTTTCGGCCGTGACATTTCATTACGGAACATCAATGGATTTGATCGGAGCCGGAAGCACTCCTTTGCATTATGCTGCTTGTGGGGGTAATTTGAAGTGTTGTCAGATCCTCCTTGCAAGGGGTGCTTCTCGATTGACTTTAAACTGTAACGGATGGCTTCCTTTAGACGTAGCTAGAATGTGGGGCCGCCATTGGCTCGAGCCACTTCTACTACCCAATTCCGATTCCACCTTACCACCATTTCCCGTGTCTAGTTACCTATCGTTGCCTCTCTTGAGCATTCTTAATATAGCAAGAGATTTTGGATACAAGTCTATGATTGCGACAAACGATGACGTGGACGCCTGCGCCGTGTGTTTGGAGAGAGTATGCTCTGTAGCAGCCGAAGGATGCGGTCACGATCTATGCGTAAGATGCGCATTATATCTTTGTTCGACGAGTAATCTCTCGTCGGAAGTAGTTAATCCACCCGGGTCTATTCCGTGTCCTCTATGTCGGCAAGGAATAATCTCATTTGTCAAATTACCACCTTCTCCGGCGAAGGAGAAACAATCGCACCTTTCGTTGGCACTCTGTACCCCATGCATGCTTCATATCCAGGACCCGGAATCTCCGGATCGTACGATCCCAATCAAGAAGAACAATCACGAGCCATCCGATTCTTCGGAGTTATTTTGCCCTCTTACTTGTACCCCATTTCCTTCGGTTACCATTCCGTTATGCACATGCCAAGACGATCCTTCATCTTTCGAGCCGCGTGAAATTGAATCGCAAAACACATCGACGGCTGAGGATAAGTTGGACGGTTCTAGACTCGAAAGAATGAGCTGTTCGAGTATGTTTTGGGGGAGGAGAAGCTGCAGCCGAGAGCATCAGTGCAATTCGGAAATCAACGCTTGA 1503 47.04 MGNSFGCSASGERLVSAARDGDLVEAKMLLDFNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVIQTLLLFRCNATRADYLSGRTALHFAALNGHVRCMRLVVADFIPSAPYEAINVKINGDRAGDVKNKSELSVLSKFVNKAADGGITALHMAALNRYFDCVQLLLDLQANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRLTLNCNGWLPLDVARMWGRHWLEPLLLPNSDSTLPPFPVSSYLSLPLLSILNIARDFGYKSMIATNDDVDACAVCLERVCSVAAEGCGHDLCVRCALYLCSTSNLSSEVVNPPGSIPCPLCRQGIISFVKLPPSPAKEKQSHLSLALCTPCMLHIQDPESPDRTIPIKKNNHEPSDSSELFCPLTCTPFPSVTIPLCTCQDDPSSFEPREIESQNTSTAEDKLDGSRLERMSCSSMFWGRRSCSREHQCNSEINA 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34567345 34570504 + BLOR17698 Blo06g01115 62408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01115 500 ProSitePatterns Zinc finger RING-type signature. 332 341 IPR017907 -
Blo06g01115 500 SUPERFAMILY RING/U-box 313 377 - -
Blo06g01115 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 375 IPR013083 -
Blo06g01115 500 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 500 - -
Blo06g01115 500 ProSiteProfiles Ankyrin repeat region circular profile. 175 204 - -
Blo06g01115 500 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Blo06g01115 500 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Blo06g01115 500 Pfam Ankyrin repeats (3 copies) 210 272 IPR002110 GO:0005515
Blo06g01115 500 SMART ring_2 317 366 IPR001841 -
Blo06g01115 500 ProSiteProfiles Ankyrin repeat region circular profile. 218 244 - -
Blo06g01115 500 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Blo06g01115 500 ProSiteProfiles Zinc finger RING-type profile. 317 367 IPR001841 -
Blo06g01115 500 MobiDBLite consensus disorder prediction 450 469 - -
Blo06g01115 500 Pfam Ankyrin repeat 176 206 IPR002110 GO:0005515
Blo06g01115 500 PANTHER HOMEOBOX PROTEIN WARIAI 1 500 - -
Blo06g01115 500 Gene3D - 8 144 IPR036770 -
Blo06g01115 500 ProSiteProfiles Ankyrin repeat profile. 175 207 IPR002110 GO:0005515
Blo06g01115 500 SMART ANK_2a 111 141 IPR002110 GO:0005515
Blo06g01115 500 SMART ANK_2a 218 250 IPR002110 GO:0005515
Blo06g01115 500 SMART ANK_2a 175 204 IPR002110 GO:0005515
Blo06g01115 500 SMART ANK_2a 77 106 IPR002110 GO:0005515
Blo06g01115 500 SMART ANK_2a 44 73 IPR002110 GO:0005515
Blo06g01115 500 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Blo06g01115 500 Gene3D - 145 267 IPR036770 -
Blo06g01115 500 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Blo06g01115 500 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Blo06g01115 500 ProSiteProfiles Ankyrin repeat profile. 218 244 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01115 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - zju:107414468 828.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01115 Blo-Chr6:34567345 Blo14g00621 Blo-Chr14:11783408 1.26E-144 dispersed
Blo06g01115 Blo-Chr6:34567345 Blo01g01117 Blo-Chr1:40085271 2.35E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01115 Blo_Chr06 FPKM 23.062897 23.612423 18.903961 18.218582 7.256139 5.829224 7.856207 14.300724 14.853814 16.5047