Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01137 ATGGTATCGAAGAATCCAAATCCGCCGGAGGGTTTCTACTTGGATCCGTCTGGAATGGCGTTGCCGGGACTCGGCCCGTTTGCATCCTCAACGGCGGCTTCAGCTTCGTCGGAGGAGGATCCGTCGAAGAAGGTTCGGAAACCCTACACAATCACCAAGTCCCGGGAGAGCTGGACCGAGCCTGAGCATGACAAGTTCCTCGAAGCACTTCAGCTCTTTGACCGAGATTGGAAAAAGATTGAAGCTTTTGTTGGGTCAAAGACTGTTATACAGATACGAAGCCATGCACAAAAGTACTTTTTAAAAGTTCAAAAGAATGGGGCTAATGAACATTTACCTCCACCTCGACCAAAGAGGAAAGCTTCTCATCCTTATCCTCAGAAAGCTTCGAAAAATGGTAGGAGGACTTCATCTGGTGGATCAATCCAGTCACCAGCTGCACTCGTTGAACCCAGATTCATTACAAGGCCAGATTCCGCTTCGATTCCTATGAGTCCTATTCCTGGTTGTAACATGTCTTCCTGGACTATTAACTCTGTCCAAACAATAAATTTATCCCACGGACCAAAAGCCGCAATTGGTGCAAATAACAGCTGCAGTAGCCATGAAAGCAATCCAGAAGCTCGTCCCACAAATGACACGATTGAACAGGGAAATAATAATCCCCTGAGAGTTTTACCAGACTTTGCTCGAGTGTACAACTTCATCGGCAGCGTTTTTGACCCCAACACTTCCGGCCATTTGCAAAAGCTAAAAACAATGGACCCCATAGATGTCGATACAGTGCTTTTGTTGATGAGAAACTTGTCAATCAATCTCACTAGTCCCGACTTCGACGACCACAGAAGGTTACTTTCATCATACGAGATCGACACTGGACCTACAAATCAAACGGACACCGATAAATACCTTTATGACGAACCCAAAACGGTTGCGTAA 939 46.11 MVSKNPNPPEGFYLDPSGMALPGLGPFASSTAASASSEEDPSKKVRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGANEHLPPPRPKRKASHPYPQKASKNGRRTSSGGSIQSPAALVEPRFITRPDSASIPMSPIPGCNMSSWTINSVQTINLSHGPKAAIGANNSCSSHESNPEARPTNDTIEQGNNNPLRVLPDFARVYNFIGSVFDPNTSGHLQKLKTMDPIDVDTVLLLMRNLSINLTSPDFDDHRRLLSSYEIDTGPTNQTDTDKYLYDEPKTVA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34831181 34834580 - BLOR17720 Blo06g01137 62430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01137 312 ProSiteProfiles SANT domain profile. 53 106 IPR017884 -
Blo06g01137 312 ProSiteProfiles Myb-like domain profile. 50 100 IPR001005 -
Blo06g01137 312 MobiDBLite consensus disorder prediction 292 312 - -
Blo06g01137 312 CDD SANT 57 100 IPR001005 -
Blo06g01137 312 Gene3D - 58 105 - -
Blo06g01137 312 MobiDBLite consensus disorder prediction 194 220 - -
Blo06g01137 312 MobiDBLite consensus disorder prediction 39 60 - -
Blo06g01137 312 MobiDBLite consensus disorder prediction 129 144 - -
Blo06g01137 312 PANTHER PROTEIN REVEILLE 6 3 307 - -
Blo06g01137 312 MobiDBLite consensus disorder prediction 24 60 - -
Blo06g01137 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 53 102 IPR006447 GO:0003677
Blo06g01137 312 SUPERFAMILY Homeodomain-like 49 105 IPR009057 -
Blo06g01137 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 104 IPR017930 -
Blo06g01137 312 MobiDBLite consensus disorder prediction 105 150 - -
Blo06g01137 312 PANTHER SWI/SNF COMPLEX-RELATED 3 307 - -
Blo06g01137 312 SMART sant 54 102 IPR001005 -
Blo06g01137 312 Pfam Myb-like DNA-binding domain 55 100 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01137 - - - zju:107414737 443.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01137 Blo-Chr6:34831181 Blo07g01411 Blo-Chr7:34132136 1.01E-75 dispersed
Blo02g00378 Blo-Chr2:4255483 Blo06g01137 Blo-Chr6:34831181 2.31E-98 transposed
Blo15g00177 Blo-Chr15:1803545 Blo06g01137 Blo-Chr6:34831181 4.50E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g765 Blo06g01137 . . . . Bpe07g00926 . . Cmo16g00104 Cmo18g01301 Cma02g01081 Cma15g01071 Car02g00823 Car15g00991 . Cpe05g00639 Cpe14g00081 . . . . . . . Cla01g00092 Cam01g0093 Cec01g0093 Cco01g0094 Clacu01g0091 Cmu01g0093 Cre09g2414 Cone1ag1192 Cone5ag0893 Cone14ag0055 . . Csa05g00104 Chy09g01391 . . . Bda06g00695 Bda15g00710 . Bpe12g00443 Bma08g00292 Bma12g01109 . Cmo02g01099 Cmo15g01128 Cma16g00097 Cma18g01270 Car16g00087 Car18g01182 Cpe09g00066 Cpe13g00273 Bhi12g00778 . . Lac11g0071 . . Lcy12g0058 Cla05g00915 Cam05g1001 Cec05g1005 Cco05g1002 Clacu05g0989 Cmu05g0945 . Lsi09g00078 Csa03g01749 Chy06g00978 Cme09g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001829 2 1 2 1 2 2 5 2 2 2 2 2 5 2 2 4 2 3 5 1 2 2 2 2 2 1 2 2 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12541 PF00249 Myb_DNA-binding 3.80E-10 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01137 Blo_Chr06 FPKM 11.259604 11.687965 17.186672 15.147236 8.422435 7.575582 8.805037 24.676888 23.52474 22.540983