Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01152 ATGGCAAGTCAGCCTCGCATCAATTCTGCTCTCGTAGTTGCCATTCGTATGGCCAAGATGTCGAAGTCAAATACAACTGGTGATTCTCAAAAAATTTATCATTTTGTACGCAATCAGCATAGGCCGGATAAGGCATACACTACAGAGCGGGCCCAGAAAAGTGGGAAGGCCAATGCAGCAAGTGGGAAGATATTTGTTACTATTCCATCTGATCATTTTGGACCCATCCCTGCTGAAAATGATCCTGGACGAAATCAGGGTGTGCTTGTTGGTGAAACTTGGGAGGACAGGTTGGAGTGTCGACAATGGGGTGCTCACTTTCCTCACGTGGCAGGCATTGCAGGGCAGTCAAACTATGGTGCACAATCAGTAGTTCTTTCTGGAGGTTACCAAGATGATGAGGATCATGGAGAGTGGTTTCTCTACACTGGGAGCGGTGGTAGAGACCTCAGTGGCAACAAACGGACAAGCAAGGACCAGTCGTTTGACCAGCAATTCGAGAAAATGAATAAAGCACTCAAAGTTAGTTGTTTGATGGGTTATCCTGTTAGGGTAGTTAGGTCGCATAAAGAGAAACGCTCTTCATATGCCCCTGAGAAAGGTTTGCGGTATGATGGAGTCTATAGAATTGAGAAATGTTGGCGAAAAGTGGGAGTTCAGGGTTTTAAAGTTTGCAGGTACTTATTTGTCAGGTGTGACAATGATCCAGCTCCTTGGACTAGTGATGAACATGGAGATCGCCCTAGAGCCTTTCCTGGCATTGCAGAGTTAAAAAAAGCAACGGACATCACAGAAAGGAAGGGAAGTCCATCGTGGGATTTCAATGTGGAAGATAATTGCTGGGTGTGGAAGAAACCTCCACCAGCAAGCAAGAAACCAATTGAAATAGAGGGTTCTGATTCAAGAAAGAGATCAATAAGAGCAATCAGGAAAGCTCATAAAATGACTGTTAGAGAAAGATTATTGAAAGAGTTCAGCTGCCTTATATGCAGACAAGTAATGACTCAGCCTGTGACAACTCCCTGTGCCCATAATTTTTGCAAGGCATGCTTGGAAGGCCGGTTTGCTGACAAGACATTCATGAGAGACAGAAGCAAAGGCGGAAGGACACTTCGGTCCCAAAAGAATATCAGGATTTGTCCTTCTTGTTCTTTGGACATCTCTGATTTTCTTCAAAATCTTCAGGTAAATCGGGAGTTACTTGACGTAATCGAAACACTAAAAAGTCAGAATGAAGAAAATGGCAATTCTGCTGATGAGTCATCTGAGGATGAAACTAATGATCAAGAGGTGAGCAAAGACAATTCTACTGAGAAATCAGATGTACCAAATAAGGATAATGAAGCCGAAGTGCATCCTAGCAAAGTTACTCCAAAAAGGGCTCAAAAGCGAATGAAACTCGACGAGCCTGAGAGTATCGATGCAGCCAAAGGTGGAGGCACAGAAGTGGATAAATCAGGATTAACTGAGGAATGCGATGGATCAGAAAAGGAAACAGCAAGCGGGAAAGCTAAGGAAGTGATGGATGGCAATGATAGCGATTCGCCGTTAGTCTTCTCAACGTGA 1566 44.0 MASQPRINSALVVAIRMAKMSKSNTTGDSQKIYHFVRNQHRPDKAYTTERAQKSGKANAASGKIFVTIPSDHFGPIPAENDPGRNQGVLVGETWEDRLECRQWGAHFPHVAGIAGQSNYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQQFEKMNKALKVSCLMGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGVQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRAFPGIAELKKATDITERKGSPSWDFNVEDNCWVWKKPPPASKKPIEIEGSDSRKRSIRAIRKAHKMTVRERLLKEFSCLICRQVMTQPVTTPCAHNFCKACLEGRFADKTFMRDRSKGGRTLRSQKNIRICPSCSLDISDFLQNLQVNRELLDVIETLKSQNEENGNSADESSEDETNDQEVSKDNSTEKSDVPNKDNEAEVHPSKVTPKRAQKRMKLDEPESIDAAKGGGTEVDKSGLTEECDGSEKETASGKAKEVMDGNDSDSPLVFST 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34939690 34944153 + BLOR17735 Blo06g01152 62445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01152 521 SUPERFAMILY RING/U-box 320 411 - -
Blo06g01152 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 434 IPR013083 -
Blo06g01152 521 MobiDBLite consensus disorder prediction 428 475 - -
Blo06g01152 521 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Blo06g01152 521 ProSiteProfiles Zinc finger RING-type profile. 327 384 IPR001841 -
Blo06g01152 521 SUPERFAMILY PUA domain-like 57 249 IPR015947 -
Blo06g01152 521 MobiDBLite consensus disorder prediction 408 521 - -
Blo06g01152 521 Pfam SAD/SRA domain 83 234 IPR003105 -
Blo06g01152 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 505 IPR045134 -
Blo06g01152 521 SMART ring_2 327 383 IPR001841 -
Blo06g01152 521 MobiDBLite consensus disorder prediction 484 510 - -
Blo06g01152 521 SMART G9a_1 78 235 IPR003105 -
Blo06g01152 521 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 505 - -
Blo06g01152 521 Gene3D - 54 250 IPR036987 -
Blo06g01152 521 ProSiteProfiles YDG domain profile. 83 231 IPR003105 -
Blo06g01152 521 Pfam RING-type zinc-finger 327 361 IPR027370 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01152 Blo-Chr6:34939690 Blo17g00555 Blo-Chr17:9965473 2.51E-19 dispersed
Blo15g00186 Blo-Chr15:1947080 Blo06g01152 Blo-Chr6:34939690 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01152 K10638 - cit:102609711 738.799