Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01180 ATGGTTTCTACTAGAAGGAGTGGATCTCTTTCTGGAAGCAACAGTAAAAGACCCTCTTCTTCCTCGGAGGATAAGCCTCCATCGCCGAAGCGTCAGAAGGTATCTGAAAATGGCGGTACATCGGAGGTGCCGGGACCTGGGGCAGAGAATTCAAAAGACTCGGTTTCGTTACCTGCTGTGGATCCCGGAGAATGTGAGCCGGAGGATGTTCAGATCGTCGGAAACGGCGGTGGAGATGGTGTTAGCGCTGTGAAAGGCCAGGCTGTGCAAACTGCTGTCGCTGTGGCCTCACCTGTAGCCGAGGGTACCACTCCGGTGATTGAAAAGCCCAGGAGTTCATTTTCTTCGTGGAGTTTGTATCCTCCTAAGCAAAACACAAATTTTGAGACTTCAACGCCATGGTGTAGGCTACTCTCGCAATTTGGGCAGAATCCGAACGTTCCCATTTGCCCTTCCAATTTCACGATTGGATCAAGCAGAGGTAGTAGTTTTCCATTGAAGGATAATACAATTAGTGCCACTTTATGCAGAATAAAGCACACCCAGAGGGAGGGAACTACTGTAGCCTTGCTGGAGAGTTCAGGGAGCAAGGGATCGGTGCTAGTAAACGGCGCAGTTGTGAAAAAGAATACCAGTTGTGTGCTTAACTCAGGCGATGAGGTGGTCTTTGGTGCTTTGGGTAACCATGCCTATATTTTCAAGCAAACTACTGACATTACGATAAAATGTTCGGAGTCTCAGAATGGAGTTGGAAAATTTCTTCAGCTCGAAAGGAGGACAGGTGATCCCTCGGCCGTGGCCGGGGCTTCTATATTGGCATCTTTGTCAAGCATTAGGCAAGATCTATCCCGTTGGAAGCCTCCTGCTCAGACGAGTAAAATCCATCCGGGTTCAGATTTGGCTTCTCATTCTGTTGTTCGTGATGCTACCGAACTTGAGATTGATGGTCCTGAAGCCAACTCCATTCCAGATTCAGGGGGCGATAAAGCTGCAGAGGTGGAAGCAATCAACAAGAGTCTTTCTCCTGACAACAACATGGACTCTGGCTTAGAGGCAGGCAATGTAAAACTTTCTGGGGTATTGGAAGAAAAAAACGAGTGGACGGGAGATTTGCAGCCAGCATCAACTCCGGGCATGTCTTTGCGGTGTCAAGCGTTTAGAGAAGACATTCATGCTGGGATAGTTGATGGCAGAAACTTGAAAGTTTCATTTGAAAACTTTCCTTACTATTTGAGTGAAAATACCAAAAATGTGCTGATTGCAGCTTCTATCATACACTTGAAGCATAAAGAACATGCAAAGTATACATCAGATCTTACAACAGTGAACCCACGGATTTTACTTTCCGGTCCTGCAGGATCAGAAATATATCAGGAGATGCTGGCGGAGGCACTAGCTAATTACTTTGGGGCTAAGTTACTCATATTTGATAGCCATTCGTTTTTGGGTGGTTTATCTTCAAAAGAAGCGGAGCTAGTGAAGGATGGAGCTAATGCAGAAAAGCCCTGTAACTGTGCTAAAGAAAGTACGGTATCTACTGAATTAGCTAAGAACATCGATCTATCTAATGGGGAAGAAGACACACCAAGCTCTTCAAATGGTCCCTTCGATGCTCTGGACTCACAATCAAAGATGGATGCAGATACCATGCCTTCTTCCTCAGGAACATCCAAAAAGTACTTTTTCAAGATTGGTGACAGAGTTAGATTTATGGGTTCGATTGGTGGTAGTTTGTATGCAGCTACATCTTCTTTGAGAGGGCCGCCCATTGGTACTCGTGGGAAGGTTTCGTTAACTTTTGAAGACAACTCTTTGTCAAAGATCGGGATAAAGTTTGATAAACCCATACCTGATGGGGTGGATCTTGGGGGTATTTGTGAAGGAGGCTATGGGTTCTTTTGCAATGCTTCTGATCTTCGTTTAGAGAACTCTGGTCCAGAAGAATTGGACAAGTTACTTATTGATACATTGTTTGAGGAAGTGAATACTGTGAGCAGAAGTTCTCCATTTATTTTGTTCATGAAAGATGCTGAGAAATCTCTAGTAGGAAATCCAGATTCATACTCTACTTTCAAAAGTGGACTAGAGAAGCTTCCGGATAATGTCATAGTAATTGTTTCTAACACTCATACGGACAATCGCAAGGAGAAGTCACATCCTGGTGGTCTGCTTTTTACAAAGTTTGGCAGCAACCAAACTGCTCTTCTTGATTTAGCTTTCCCGATGAGTGGTGAATGGCTTTATTGTACAGACAAACCTTTGCAAATGTGTATGATCCGGACCCACACTTGGATCATCCTTGCTTTCACAAGGCGAGTTGCCACAATCCCCCCCTCCCCTCTCGTCCTTGTCGGCTACATTTTTGGTTGGGATAGTTTTGGAAGATTGCATGATAAAGGGAAGGAAGTTCCAAAAGCAACAAAGCTGCTGGCCAAACTTTTCCCGAACAAAGTAACAATTCACATGCCACAGGACGAGGCACTGCTTGTATCTTGGAAGCACCAACTTGATCGTGATATGGAAACCCTGAAAGTTAAGGGAAATCTGAATCACTTGCGAACTGTCTTGAGTCGGAGTGGAATGGATTGTGAAGGACTTGATACTCTATGCATAAAGGATCAAACACTTACAAATGAGAGTGCAGAGAAGGTAGTCGGATGGGCACTAAGCCATCATTTAATGAACAATGCTCATGCTGATACCGATGCTCGGCTTGTCTTGTCTAGCGAGAGCATCCAGTATGCGGTTGGATTATTACATTCCATCCAGAATGAATCTAAGAGCTTAAAGAAGTCTCTTAAGGATGTTGTCACTGAAAACGAATTTGAGAAAAGGCTCTTAGCTGATGTTATTCCACCAAGTGACATTGGAGTCACATTTGACGATATTGGAGCTCTGGAAAATGTGAAAGATACTTTGAAGGAATTAGTCATGCTCCCATTGCAAAGGCCTGAACTATTCTGCAAGGGGCAGCTAACTAAGCCATGCAAAGGGATACTATTATTTGGGCCCCCTGGTACTGGTAAGACAATGCTCGCAAAAGCTGTTGCCACTGAAGCAGGTGCAAATTTCATTAACATTTCTATGTCTAGCATCACATCCAAGTGGTTTGGCGAGGGTGAAAAGTACGTAAAGGCTGTCTTCTCGTTGGCTAGTAAAATCGCTCCTAGTGTCATATTTGTCGATGAAGTTGATAGCATGTTGGGGCGTAGGGAAAATGCTGGGGAGCATGAAGCCATGCGAAAGATGAAAAACGAATTTATGGTAAATTGGGATGGCTTACGAACAAAAGATACGGAACGAGTGCTTGTTCTTGCAGCTACCAATCGACCTTTTGACTTAGACGAGGCTGTTATTCGAAGACTCCCTCGAAGATTAATGGTAAATTTGCCGGATTCCTCGAATAGAGCCAAAATTTTGAAAGTCATACTGGCAAAGGAGGATTTGTCTCCTGCTGTTGATTTTGATTCGATTGCAAGTATGACAGACGGATATTCTGGCAGTGACCTGAAGAATTTGTGTGTAACTGCTGCTCACCGACCAATTAAAGAGATATTAGAAAAAGAAAAGAAGGACAGTGCCACAGCGCTGGCTGAAGGTCGGCCTGTCCCGGCATTGAGTGGAAGTGCTGATATAAGACCTCTAAACATGGAGGATTTCAAATACGCACATGAACGGGTATGTGCGAGTGTTTCGTCGGAGTCGGTAAACATGGCCGAGCTTGTACAATGGAATGAGCTATATGGTGAGGGGGGTTCAAGAAGAAAGAGGGCTCTGAGTTACTTCATGTGA 3792 44.46 MVSTRRSGSLSGSNSKRPSSSSEDKPPSPKRQKVSENGGTSEVPGPGAENSKDSVSLPAVDPGECEPEDVQIVGNGGGDGVSAVKGQAVQTAVAVASPVAEGTTPVIEKPRSSFSSWSLYPPKQNTNFETSTPWCRLLSQFGQNPNVPICPSNFTIGSSRGSSFPLKDNTISATLCRIKHTQREGTTVALLESSGSKGSVLVNGAVVKKNTSCVLNSGDEVVFGALGNHAYIFKQTTDITIKCSESQNGVGKFLQLERRTGDPSAVAGASILASLSSIRQDLSRWKPPAQTSKIHPGSDLASHSVVRDATELEIDGPEANSIPDSGGDKAAEVEAINKSLSPDNNMDSGLEAGNVKLSGVLEEKNEWTGDLQPASTPGMSLRCQAFREDIHAGIVDGRNLKVSFENFPYYLSENTKNVLIAASIIHLKHKEHAKYTSDLTTVNPRILLSGPAGSEIYQEMLAEALANYFGAKLLIFDSHSFLGGLSSKEAELVKDGANAEKPCNCAKESTVSTELAKNIDLSNGEEDTPSSSNGPFDALDSQSKMDADTMPSSSGTSKKYFFKIGDRVRFMGSIGGSLYAATSSLRGPPIGTRGKVSLTFEDNSLSKIGIKFDKPIPDGVDLGGICEGGYGFFCNASDLRLENSGPEELDKLLIDTLFEEVNTVSRSSPFILFMKDAEKSLVGNPDSYSTFKSGLEKLPDNVIVIVSNTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPMSGEWLYCTDKPLQMCMIRTHTWIILAFTRRVATIPPSPLVLVGYIFGWDSFGRLHDKGKEVPKATKLLAKLFPNKVTIHMPQDEALLVSWKHQLDRDMETLKVKGNLNHLRTVLSRSGMDCEGLDTLCIKDQTLTNESAEKVVGWALSHHLMNNAHADTDARLVLSSESIQYAVGLLHSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENAGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSSNRAKILKVILAKEDLSPAVDFDSIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDSATALAEGRPVPALSGSADIRPLNMEDFKYAHERVCASVSSESVNMAELVQWNELYGEGGSRRKRALSYFM 1263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35261045 35271631 + BLOR17763 Blo06g01180 62473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01180 1263 SUPERFAMILY SMAD/FHA domain 133 233 IPR008984 GO:0005515
Blo06g01180 1263 ProSitePatterns AAA-protein family signature. 1102 1121 IPR003960 GO:0005524|GO:0016887
Blo06g01180 1263 MobiDBLite consensus disorder prediction 521 554 - -
Blo06g01180 1263 Pfam ATPase family associated with various cellular activities (AAA) 999 1128 IPR003959 GO:0005524|GO:0016887
Blo06g01180 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 958 1237 IPR027417 -
Blo06g01180 1263 Gene3D - 133 240 - -
Blo06g01180 1263 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 781 1263 - -
Blo06g01180 1263 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 81 736 - -
Blo06g01180 1263 Pfam AAA+ lid domain 1153 1187 IPR041569 -
Blo06g01180 1263 MobiDBLite consensus disorder prediction 1 77 - -
Blo06g01180 1263 Gene3D - 1131 1225 - -
Blo06g01180 1263 Pfam FHA domain 155 224 IPR000253 GO:0005515
Blo06g01180 1263 Gene3D - 957 1237 IPR027417 -
Blo06g01180 1263 SMART AAA_5 995 1132 IPR003593 -
Blo06g01180 1263 MobiDBLite consensus disorder prediction 1 22 - -
Blo06g01180 1263 CDD AAA 997 1130 - -
Blo06g01180 1263 CDD FHA 134 234 IPR000253 GO:0005515
Blo06g01180 1263 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 781 1263 - -
Blo06g01180 1263 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 81 736 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01180 - - - csv:101214766 1825.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g01180 Blo15g00212 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00311 Blo-Chr5:3480014 Blo06g01180 Blo-Chr6:35261045 0 dispersed
Blo06g00486 Blo-Chr6:26457754 Blo06g01180 Blo-Chr6:35261045 0 dispersed
Blo06g01180 Blo-Chr6:35261045 Blo15g00212 Blo-Chr15:2156495 0 dispersed
Blo11g00621 Blo-Chr11:6342567 Blo06g01180 Blo-Chr6:35261045 1.21E-69 transposed
Blo15g00213 Blo-Chr15:2173917 Blo06g01180 Blo-Chr6:35261045 6.38E-102 wgd
Blo06g01180 Blo-Chr6:35261045 Blo09g00009 Blo-Chr9:67563 1.01E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g809 Blo06g01180 Blo15g00212 . . . . . . . . Cma02g01088 . Car02g00831 . . . . . . . . . . . . . . . . . . . Cone5ag0903 . . . . . . . . Bda06g00733 . . Bpe12g00487 . . . Cmo02g01109 . . . . . . . Bhi12g00765 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01180 Blo_Chr06 FPKM 0.495495 0.0 0.0 0.550163 1.51042 1.323724 0.918647 0.082285 0.084949 0.0