Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01194 ATGCCCTTCTACCTCCTCCTTCCTCAATTGCCTCCACTCCATTCTTCAATCGGTCCAAATATTCGTCTCCTCTTTCTGATTCAGGATCCTCCTCTCTCTGCCGTCTTAATTCGGATGGAGCCGATGGATATAGTGGGAAAGTCAAAAGAGGACGCTTCGCTTCCGAAAGCAACTATGACGAAAATCATCAAGGAGATGTTGCCGCCAGATGTACGAGTCGCAAGAGATGCTCAAGATCTTTTAATCGAGTGTTGTGTAGAGTTTATAAATCTAGTATCATCGGAGTCTAATGAAGTATGTAACAGGGAAGATAAAAGAACGATTGCGCCTGAACATGTACTCAAGGCATTACAGGAAAATAGTGATGGTATGGAGAATAGAGAGAGAGAGAGAGAGAGAACTAGAGGAATTTTGGAGAATGATGAAATACAGGGAATTCTTGGTTTTAGCGAGTACATCGAAGAAGTCTATTCTGCATATGAACAGCACAAGATTGAGACCATGCAAGACTCCTTGAAGGGTGGAAAGTGGAGCAATGGAGCTGAGATGACAGAGGAGGAGGCCCTGCTGGAGCAGCAGAGAATGTTTGCTGAGGCTCGAGCAAGAATGAACGGCGTGGCCGAAGCTCCAAAGCAACCAGAGGCTGATCAAAGTTTAGAGAGCTAA 666 45.05 MPFYLLLPQLPPLHSSIGPNIRLLFLIQDPPLSAVLIRMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALQENSDGMENRERERERTRGILENDEIQGILGFSEYIEEVYSAYEQHKIETMQDSLKGGKWSNGAEMTEEEALLEQQRMFAEARARMNGVAEAPKQPEADQSLES 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35462669 35465323 - BLOR17777 Blo06g01194 62487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01194 221 SUPERFAMILY Histone-fold 50 120 IPR009072 GO:0046982
Blo06g01194 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 52 117 IPR003958 -
Blo06g01194 221 Coils Coil 114 134 - -
Blo06g01194 221 PANTHER PROTEIN DR1 HOMOLOG 144 220 - -
Blo06g01194 221 PANTHER PROTEIN DR1 HOMOLOG 39 119 - -
Blo06g01194 221 Gene3D Histone, subunit A 42 210 IPR009072 GO:0046982
Blo06g01194 221 PANTHER PROTEIN DR1 HOMOLOG 144 220 IPR044255 -
Blo06g01194 221 PANTHER PROTEIN DR1 HOMOLOG 39 119 IPR044255 -
Blo06g01194 221 MobiDBLite consensus disorder prediction 201 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01194 K21751 DR1, NC2-beta; down-regulator of transcription 1 - tcc:18604965 273.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01194 Blo-Chr6:35462669 Blo11g00227 Blo-Chr11:1847022 7.89E-13 dispersed
Blo16g00147 Blo-Chr16:3246930 Blo06g01194 Blo-Chr6:35462669 4.41E-80 wgd
Blo04g00812 Blo-Chr4:8423345 Blo06g01194 Blo-Chr6:35462669 5.62E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00147 . 1 148 CCAAT-DR1 Transcription Factor Family AT5G08190 79.7 4.0e-59 224.6
Blo06g01194 . 39 214 CCAAT-DR1 Transcription Factor Family AT5G08190 71.0 6.8e-59 223.8
Blo04g00812 . 102 235 CCAAT-DR1 Transcription Factor Family AT5G08190 79.9 8.6e-54 206.8
Blo06g01194 . 39 217 CCAAT-DR1 Transcription Factor Family AT5G23090 70.7 9.9e-63 236.5
Blo16g00147 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G23090 78.5 6.6e-59 223.8
Blo04g00812 . 102 235 CCAAT-DR1 Transcription Factor Family AT5G23090 81.3 1.5e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12547 PF00808 CBFD_NFYB_HMF 8.10E-22 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01194 Blo_Chr06 FPKM 23.643127 24.151848 22.15196 23.101686 29.117626 27.025314 29.540129 16.854641 15.928944 17.462343