Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01211 ATGAATTCAAAGGAAAAAAGCTTAAAAGCAAAGGCAGAGGGAGAGACCACCGCAAACGAGTGGAAATTACCCAAGTCGTTGGCATCGAGTTCAAGATCATGGTCGGGATCGAGAAATCCGAGGATCGTGCGTGTTTCTCGAATGTTTGGAGGGAAAGACAGACATAGTAAAGTTTGTACAATCCGAGGATTGAGAGATAGGAGGATTAGGCTTTCAGTCCCAACTGCAATTCAACTATATGATCTTCAAGATAGACTTGGAGTAAATCAACCAAGCAAGGTAATCGATTGGTTGCTTGCCGTCACGAAGCTCGATATCGATAAGCTCCCTCCGCTCCAACTACCTCCTGGATTCGGTCAATTAGGTCGAGAAATCTTGACTTCTCAAGATCATTCAGAAATTATGTCGAAAAGTAAGCAAATCCAAAAAGGAGAGAATTTGGTGAAAGAAAAGTCGATTAAAACACACGAAGACGAAGAAGAACAAGTTCATCAAGCCATTTGGGATTATAACAACCAAATTTCCGGGCAAAAGCTATTCCAATCGGCAAATGTTTCGTCTTTGCCGAGTCTCGCTTACGATAACCGTTACTATTCGGATCAACCCTCTTGTTTATCTCTATCTCAGTTTGGAAATCATGGAGTTTTTCAACCCCAATCGGAGATTACCCAAACAGCCCATAATTCTCTACAAATTCCTCCATTATTATCAGCATCGTCTTCTCAAATTTTCTTCTGCCAACCTTCTGTAACACCAGCTGCTTTGTTTACCCCTTTTCCTTCTCATATCTCCACTCCATTGGAGAGTAGTGACACTACCAGGCTTTACAGCAATATCCAAATGTTAAATTCTACTCATCTTTTCAGCTCACCTGGCAAGTTTTTTCCTCCAAATCTTAGTCCAAAGCCTGAAAATTCAGAAAACAGGAACAGCCCAGAAAAGAATGATCCTAAGTAA 957 41.17 MNSKEKSLKAKAEGETTANEWKLPKSLASSSRSWSGSRNPRIVRVSRMFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGVNQPSKVIDWLLAVTKLDIDKLPPLQLPPGFGQLGREILTSQDHSEIMSKSKQIQKGENLVKEKSIKTHEDEEEQVHQAIWDYNNQISGQKLFQSANVSSLPSLAYDNRYYSDQPSCLSLSQFGNHGVFQPQSEITQTAHNSLQIPPLLSASSSQIFFCQPSVTPAALFTPFPSHISTPLESSDTTRLYSNIQMLNSTHLFSSPGKFFPPNLSPKPENSENRNSPEKNDPK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35675705 35676746 - BLOR17794 Blo06g01211 62504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01211 318 MobiDBLite consensus disorder prediction 22 37 - -
Blo06g01211 318 Pfam TCP family transcription factor 51 161 IPR017887 -
Blo06g01211 318 PANTHER TRANSCRIPTION FACTOR TCP17 2 301 - -
Blo06g01211 318 MobiDBLite consensus disorder prediction 1 37 - -
Blo06g01211 318 MobiDBLite consensus disorder prediction 293 318 - -
Blo06g01211 318 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 301 IPR005333 GO:0003700
Blo06g01211 318 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Blo06g01211 318 MobiDBLite consensus disorder prediction 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01211 - - - qsu:112017684 257.684
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01211 Blo-Chr6:35675705 Blo18g00411 Blo-Chr18:4427035 4.51E-46 dispersed
Blo16g00158 Blo-Chr16:3590696 Blo06g01211 Blo-Chr6:35675705 3.93E-64 wgd
Blo04g00796 Blo-Chr4:7977247 Blo06g01211 Blo-Chr6:35675705 4.75E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00426 . 35 259 TCP Transcription Factor Family AT5G23280 51.7 2.3e-50 196.1
Blo04g00768 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 81.7 5.6e-40 162.5
Blo10g00401 . 1 284 TCP Transcription Factor Family AT3G27010 53.0 5.0e-66 248.4
Blo11g00611 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 3.8e-58 222.2
Blo17g00570 . 1 272 TCP Transcription Factor Family AT3G27010 50.2 1.1e-57 220.7
Blo04g00426 . 8 259 TCP Transcription Factor Family AT5G08330 51.8 4.9e-58 221.5
Blo06g01211 . 26 126 TCP Transcription Factor Family AT5G60970 76.5 1.3e-38 157.5
Blo13g00343 . 8 191 TCP Transcription Factor Family AT2G31070 53.8 8.3e-41 164.9
Blo13g00346 . 8 191 TCP Transcription Factor Family AT2G31070 53.3 1.1e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013699 2 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 1 1 1 0 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12550 PF03634 TCP 2.90E-26 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo06g01211 Blo_Chr06 FPKM 0.809573 1.153159 0.214855 0.178852 0.249971 0.33384 0.0 0.212443 0.124792 0.194792