Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo06g01214 ATGGCAAAGACAGCGACACCTGGTGGGATTTTGACGATTCTGGCTAATCCATCGTCTGAATCCTTATCGGTAGTTGCAGATATAGTGGTTCAGGTCATCGATCTCAAAGCGGCCGGCAATCGGTACATGTTTACAGCCAGCGATGGAAATATGAAGTTGAAAGCTATTCTGCCGTCAAATCTCACTTCCGATGTGATCTCAGGGAAGATTCAGAGCTTAGGTCTTATTCGTATTCTTGATTATTCCCTCAATGACATCCCAAATAAGTCCGAGAAGTATTTGATTGTGACTAAATGCGAGGTTGTTTCTCCTTCCCTTGAAATGGAGATCAATAATATAGTCAAAAGTGAGGGTTCTGGAATGTTCCTGACACCGAAACAAGAAAATGTCCGCGAGAGTGAAATGAAAGAGGAAAGACCAGGTATTCTTCTCAAGCCCAAGCCAGAAATGTATACAAAATCAGCCGCTGAAATTGTACAAGAACAAAGATCAAACATGCCCCCGACTGCACGAATGGCAATGACGAGGAGAGTTCATCCACTTCTTTCGTTGAATCCTTACCAAGGCAATTGGACAATTAAAGTTCGTGTTACGAACAAGGAAGTTATGCGTAATTATAAGAACGCCAGGGGAGAAGGATGTGTCTTCAACGTGGAGTTAACTGATGATAATGAAACCCAAATTCAGGCAACGATGTTTAATGAAGCTGCAAGAAAGTTCTATGATAAGTTTGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAAATCTCAAGGTTGCCAACAAGAGATTCAGTACAGTGAAAAATGATTATGAAATGACTTTAAATGAGAATTCCGAGGTGGAAGAGGTCGCCAATGAAGCTACTTTTGTGCCCGAGACAAAATTCAGTTTTGTCCCAATCGACATGTTGGGTCCCTACGTGAATGGAAAAGAACTCGTAGATGTCATTGGAGTTGTTCAGAATGTTTCTTCCACGATGAGTATTCGAAGGAAGATCAATAATGAAACTGCTCCAAAGCGTGAAATAACTATTGCTGATGAGACAAAAAAGACTGTTGTGGTCTCTCTATGGAACGAGCTTGCAACTACTGTGGGACAGGAGTTGCTTGACAAAGCTGACCAATCGCCAGTAATTGCTATTAAATCTCTTAGAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCAGTGAGCAGAAGTAAATTGCTGGTAAATCCAGACATACCTGAGGCAAAAAAGTTGAAATCCTGGTTTGATTCTGAAGGCAAAGGAACATCAATGGCGTCTGTTGGCTCTGGTTTGAGCCCATCATCCACAAATGGAGTAAGGTCGATGTACACGGACCGGATATCTCTGTCTCACATAATTCAAAACCCATCACTAGGGGATGATAAGCCAGCATTCTTCAGCATAAGGGCATACATCAGCCTCATCAAGCCTGAGCAGACAATGTGGTACAGAGCTTGCCAGACTTGCAACAAGAAGGTGACTGCGGCCATGGGTTCTGGATTCTGGTGTGAAAATTGCCAGAAGAATGACGAAGAATGCAGTTTAAGATATATCATGGTAGTTAGAGTTTCTGATGCCGGTGGTGAAGTCTATCTCTCTCTCTTCAATGAAGCGGCAGAAAAAATTATTGGGTGCTCAGCTGATGAGCTTGACAAAATGAAATCCCAGATGGGTGAAGAGAACTCGTATGAGATGAAACTGAAAGAGGCTACTTGGATTCCTCATCTGCTGAGGATTAGCGTTTCCCAGAATGAATACAACAATGAGAAGAGACAACGGGTCACTGCCAGAGCAGTTGATGCTGTTGATTTTGCTTCTGAATCCAGATTTTTGCTTGAAGAAATATCGAAGATGAGGCTTTCAAGATAA 1878 42.07 MAKTATPGGILTILANPSSESLSVVADIVVQVIDLKAAGNRYMFTASDGNMKLKAILPSNLTSDVISGKIQSLGLIRILDYSLNDIPNKSEKYLIVTKCEVVSPSLEMEINNIVKSEGSGMFLTPKQENVRESEMKEERPGILLKPKPEMYTKSAAEIVQEQRSNMPPTARMAMTRRVHPLLSLNPYQGNWTIKVRVTNKEVMRNYKNARGEGCVFNVELTDDNETQIQATMFNEAARKFYDKFELGKVYYISKGNLKVANKRFSTVKNDYEMTLNENSEVEEVANEATFVPETKFSFVPIDMLGPYVNGKELVDVIGVVQNVSSTMSIRRKINNETAPKREITIADETKKTVVVSLWNELATTVGQELLDKADQSPVIAIKSLRVGDFQGVSLSSVSRSKLLVNPDIPEAKKLKSWFDSEGKGTSMASVGSGLSPSSTNGVRSMYTDRISLSHIIQNPSLGDDKPAFFSIRAYISLIKPEQTMWYRACQTCNKKVTAAMGSGFWCENCQKNDEECSLRYIMVVRVSDAGGEVYLSLFNEAAEKIIGCSADELDKMKSQMGEENSYEMKLKEATWIPHLLRISVSQNEYNNEKRQRVTARAVDAVDFASESRFLLEEISKMRLSR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35741905 35745058 - BLOR17797 Blo06g01214 62507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo06g01214 625 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 619 - -
Blo06g01214 625 CDD RPA1_DBD_A 180 283 - -
Blo06g01214 625 Gene3D - 177 286 IPR012340 -
Blo06g01214 625 CDD RPA1_DBD_C 463 620 IPR013955 -
Blo06g01214 625 SUPERFAMILY Nucleic acid-binding proteins 446 621 IPR012340 -
Blo06g01214 625 CDD RPA1_DBD_B 313 419 - -
Blo06g01214 625 Pfam Replication protein A OB domain 309 405 IPR031657 -
Blo06g01214 625 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
Blo06g01214 625 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Blo06g01214 625 Gene3D - 291 431 IPR012340 -
Blo06g01214 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Blo06g01214 625 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Blo06g01214 625 SUPERFAMILY Nucleic acid-binding proteins 178 288 IPR012340 -
Blo06g01214 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Blo06g01214 625 Gene3D - 432 621 IPR012340 -
Blo06g01214 625 Gene3D - 5 115 IPR012340 -
Blo06g01214 625 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Blo06g01214 625 PANTHER REPLICATION FACTOR A 1, RFA1 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00091 Blo-Chr3:3077096 Blo06g01214 Blo-Chr6:35741905 9.42E-91 transposed
Blo16g00969 Blo-Chr16:37955158 Blo06g01214 Blo-Chr6:35741905 1.45E-94 transposed
Blo15g00339 Blo-Chr15:4088092 Blo06g01214 Blo-Chr6:35741905 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo06g01214 K07466 - mnt:21390529 937.947