Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00016 ATGGGAAGGGGGAGAGTGGAGCTAAAGAGGATCGAGAACAAAATCAACAGGCAAGTGACCTTCGCGAAGAGAAGAAATGGCCTGTTGAAGAAAGCATATGAGCTTTCCGTTCTCTGCGATGCAGAGGTTGCCCTCATCATCTTCTCCAATAGGGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTTGAGCGATACCAAAAATGCCACTACGGAGCACCAGAGCCTTCTGTTTCCACAAGAGAAGCCTTGGAGTTAAACAGCCAGCAGGAATATTTGAAGCTTAAAGCACGTTATGAAGCTCTACTGAGATCCCAAAGGAACCTTTTGGGTGAAGATCTTGGGCCTTTGAGTAGTAAAGACCTTGAGTCGCTTGAAGGGCAGTTGGATTCATCACTCAAACAGATCAGATCAACAAGGACTCAGTATATGCTGGACCAGCTCTCTGATCTTCAACGCAAGGAACACTTGCTGAATGAAGCAAACAAGACCCTGAAACATAGGATTTTGTTTTCTCTTGGGCTGCAGCTGGTGGAAGGCTACCAAATAAGCTCACTGCAACTGATTCCAAATGAAGAGGAAGTTGTTTATGATCGACAGCATCCTCAATCTCAAGGAGATGGATTCTTTCATCCCTTAGACTGCGAACCAACTTTGCACATTGGATATCCGCCTGATGCAATAACGGTGGTGGAAGCAGGCTCTAGCATGAACAATTACATGCCAGTCTGGTTACCATGA 753 45.68 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCHYGAPEPSVSTREALELNSQQEYLKLKARYEALLRSQRNLLGEDLGPLSSKDLESLEGQLDSSLKQIRSTRTQYMLDQLSDLQRKEHLLNEANKTLKHRILFSLGLQLVEGYQISSLQLIPNEEEVVYDRQHPQSQGDGFFHPLDCEPTLHIGYPPDAITVVEAGSSMNNYMPVWLP 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 341868 352905 + BLOR17948 Blo07g00016 62540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00016 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo07g00016 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo07g00016 250 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo07g00016 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo07g00016 250 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Blo07g00016 250 Coils Coil 126 146 - -
Blo07g00016 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 236 - -
Blo07g00016 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo07g00016 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo07g00016 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo07g00016 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Blo07g00016 250 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Blo07g00016 250 ProSiteProfiles K-box domain profile. 89 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo07g00016 250 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 236 - -
Blo07g00016 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00941 Blo-Chr6:32637827 Blo07g00016 Blo-Chr7:341868 1.96E-54 dispersed
Blo07g00016 Blo-Chr7:341868 Blo18g00414 Blo-Chr18:4509735 2.78E-99 dispersed
Blo07g00444 Blo-Chr7:8918142 Blo07g00016 Blo-Chr7:341868 1.08E-43 dispersed
Blo14g00857 Blo-Chr14:31482245 Blo07g00016 Blo-Chr7:341868 2.99E-43 dispersed
Blo11g00613 Blo-Chr11:6178317 Blo07g00016 Blo-Chr7:341868 2.80E-27 transposed
Blo02g00195 Blo-Chr2:1761044 Blo07g00016 Blo-Chr7:341868 3.11E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12557 PF01486 K-box 2.20E-25 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00016 - - tcc:18608957 411.764