Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00054 ATGGCTCTTTCCTCTAATTTCTTCTTCATATTTGTGCTTCTTGTCTCGGTTTCGCTTTCCCCTTGTCTTTGCTTCAACCCGAAGCTCATCTTCAATGTCTCCGAATCTCAACCCGCCAATGGTTGGTCGTCCGCCAAAGCAACGTGGTATGGAGGTGCCACTGGTGACGGGAGCGAGGTAGGGGGTGCTTGTGGGTATAAAGCAGCAGTAGGGCAACGTCCATTTTCTTCATATATAGCAGCTGGAGGGCCATCACTGTTCAAATCAGGGCAAGGATGTGGAGCTTGTTATCAGGTGATGTGCACGCAAAATTCGGCTTGCTCCGGCAGTCCGGTGACAGTGGTTATCACCGATAGCTGTCCAGGCGGTGTTTGTGCTTCTGATGCTGTCCACTTTGACTTGAGCGGCACCGCCTTCGGAGCCATGGCTAAATCTGGACAACAAAATCAACTCCGTGATGCAGGAAGTCTTCAAATTCAATACCAAAGGGTCCAATGTAGTTATCCCGGCGCCCATCTCTCCTTCTCTGTAGCTGCAGGCTCGAATCCGAACTTCTTCGAAACCCTAATTGAGTATCAAGGCGGAGATGGTGATCTTTCCTTAGTAGAAATTAGGCAAGGAAGAGACTCAATATGGTCTAAAATGCAACAATCTTGGGGTGCTGTTTGGAAATTCAATAGCGGCTCAACCTTACAGGCCCCGTTTTCTCTCCGACTAACCTCGCTCCAGTCAGGTCAATCGATCGTTGCCAACAATGTCATTCCGGTAGTTGTTCTTCTCCTGCTTCCGCTTTTGCTCTCCGAATCTCAATCTGCCGACGGCTGGTCTGCCGCCGGAGCAACGTGGTATGGAAGCTCGACCGGAGATGGAAGCGAAGTAGGAGGTGCTTGTGGGTATGGAGCATCAGTAGGGACAGCTCCATTTTCATCACTTATATCAGCTGGAGGGCCTTCACTGTTCAAATCAGGGCAAGGATGTGGAGCTTGTTATCAGGTGAAGTGCACCGCAAATTCGGCTTGCTCCGGCAATCCGGTGACCGTGGTTATCACTGATAGCTGTCTAGGCGGTGTTTGTGCTTCTGATGCCGTCCATTTTGACTTGAGCGGCACCGCCTTCGGGGCCATGGCTATATCTGGAGAAGAAGATCAACTCCGTGATGCAGGAAGTATTCAAATTCAATACCAAAGGGTCCAGTGCAGTTATCCCGGCACTCCCCTCACTTTTACCGTAGAGACAGGATCGAATTCGTATTACTTTGCAACCTTAATTGAGTATCAAGGGGGAGATGGTGATCTTGCTTTAGTAGAACTCATGGAAGGCACAGGATCGTGGGTTCAAATGCAACATTCTTGGGGTGCTGTTTGGCAATTCGATAACGGGTTAATTGATGTTTGCATGGCTTTGATTGTGGATCAAGAGCCAACCTTTAAGCATTTTTGCAAAATCTGCAAGAAAGGGTTTGTATGTGGTAGAGCTCTAGGAGGGCACATGAGGACCCACGGCATCGGTGACGAGATCGGTAGTATTGATGATGATGACGATCTTGCTGGAGAATGGGATGAAAAAATCCACGCTAAAGTTGTCCGTCCAATCAACAAACGGCCGATGTATGCTCTCCGAACAAACCCTAATCGCCTCAAAACTTGTAGGGTTTGTGAGAACTGTGGCCAAGAATTCTTGTCGTGGAAATCCTTTCTCGGACATGGAAAATGCACCTCCGATGATGCCGAATCTCTCATGTCATCCCCAGACTCTGATGGCGATATCGATAGCCGACAAGGGAACGGGTGGTACAAAAGAAAACGATCACTTCGAGTGAAAGTTGATAACTTCAATTGCCCATCGAGCGAAGAAGAAGACCTGGCGAATTGCTTGATGATGTTGTCAAATGCAAACGGCTCCGATCGTTTTTCGGCCGAGCAAGAAGAGTCGTGTGCATCGGCGAGCAAAGAAGATGACCGGAGAAACCCCATGAACGACCGGAGAAACCCGACAAATTATCTCTCACCGATTTCTGGTAGAATTCCTCGAGAAATCGACAAATCGAAATCGATTCCTTCAAAGGGAATTTTCGAGTGTAAAGCTTGTAAAAAAGTGTTCAATTCTCACCAAGCTTTAGGTGGCCATAGAGCAAGCCACAAGAAGGTTAAAGGCTGTTTTGCAGCCAAGCTAGATCAAACAGAAGAGAGCCCAGAAAACGACGACGTTATAACCCAGGAAGATCATCAATTCATATCCACTAAATCAAGCTCCAGCTTACAGCTGTTCAATGGCGGAACCAGCAGCAGTAATCTTCCATTAATGGCTCCCACCTCGAAGAAAAGGACGAAAATTCACGAGTGCTCCATTTGTCAGCGGATTTTCACTACTGGGCAAGCTTTAGGCGGCCATAAACGCTGTCATTGGATAACTTCCACCGCACCAGAAAACTCAAAACTAGCGAAAATCCACCATTTAGAAGATCAAATGGAGCAGATAAACAATAACAACAACAACGCGACAGATTCGCTCGATCTGAAGCTCGATCTGAACTTTCCGGCACCGGGGGACGAACGAGTTTCAACTCCGGCGAACATACAAGTATCTGCCTCGATTTATTTACAGTCATGGATAAAAGGAAAGGACAAGGAAGAAGAAGAAGATGGCAGCCAGTACTATAACCGTCACCTGCATCAGATTAACGAGAACGAAAAGTACAGAAACGATGATGGCGACGCCATGATTCAGAAGTTGGACGACGAAGCAGACAGTAAGGTGAAGTTAGCAAAGCTTGGTGAGCTTAAGGATAAGAATATCAATGGCGGTTCATCGCCATGGTTGCAGATGGGAATCGGTTCAACCACTGCTACAGTAGCTGACCCTTGA 2865 47.57 MALSSNFFFIFVLLVSVSLSPCLCFNPKLIFNVSESQPANGWSSAKATWYGGATGDGSEVGGACGYKAAVGQRPFSSYIAAGGPSLFKSGQGCGACYQVMCTQNSACSGSPVTVVITDSCPGGVCASDAVHFDLSGTAFGAMAKSGQQNQLRDAGSLQIQYQRVQCSYPGAHLSFSVAAGSNPNFFETLIEYQGGDGDLSLVEIRQGRDSIWSKMQQSWGAVWKFNSGSTLQAPFSLRLTSLQSGQSIVANNVIPVVVLLLLPLLLSESQSADGWSAAGATWYGSSTGDGSEVGGACGYGASVGTAPFSSLISAGGPSLFKSGQGCGACYQVKCTANSACSGNPVTVVITDSCLGGVCASDAVHFDLSGTAFGAMAISGEEDQLRDAGSIQIQYQRVQCSYPGTPLTFTVETGSNSYYFATLIEYQGGDGDLALVELMEGTGSWVQMQHSWGAVWQFDNGLIDVCMALIVDQEPTFKHFCKICKKGFVCGRALGGHMRTHGIGDEIGSIDDDDDLAGEWDEKIHAKVVRPINKRPMYALRTNPNRLKTCRVCENCGQEFLSWKSFLGHGKCTSDDAESLMSSPDSDGDIDSRQGNGWYKRKRSLRVKVDNFNCPSSEEEDLANCLMMLSNANGSDRFSAEQEESCASASKEDDRRNPMNDRRNPTNYLSPISGRIPREIDKSKSIPSKGIFECKACKKVFNSHQALGGHRASHKKVKGCFAAKLDQTEESPENDDVITQEDHQFISTKSSSSLQLFNGGTSSSNLPLMAPTSKKRTKIHECSICQRIFTTGQALGGHKRCHWITSTAPENSKLAKIHHLEDQMEQINNNNNNATDSLDLKLDLNFPAPGDERVSTPANIQVSASIYLQSWIKGKDKEEEEDGSQYYNRHLHQINENEKYRNDDGDAMIQKLDDEADSKVKLAKLGELKDKNINGGSSPWLQMGIGSTTATVADP 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 773870 785000 + BLOR17986 Blo07g00054 62578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00054 954 ProSitePatterns Zinc finger C2H2 type domain signature. 693 713 IPR013087 -
Blo07g00054 954 SUPERFAMILY Barwin-like endoglucanases 37 170 IPR036908 -
Blo07g00054 954 ProSitePatterns Zinc finger C2H2 type domain signature. 781 801 IPR013087 -
Blo07g00054 954 Gene3D - 264 399 IPR036908 -
Blo07g00054 954 Gene3D - 31 166 IPR036908 -
Blo07g00054 954 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 294 404 IPR007112 -
Blo07g00054 954 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 171 IPR007112 -
Blo07g00054 954 SUPERFAMILY PHL pollen allergen 173 255 IPR036749 -
Blo07g00054 954 Pfam Lytic transglycolase 80 161 IPR009009 -
Blo07g00054 954 Pfam Lytic transglycolase 313 394 IPR009009 -
Blo07g00054 954 PANTHER EXPANSIN-B3 264 460 - -
Blo07g00054 954 SUPERFAMILY beta-beta-alpha zinc fingers 690 801 IPR036236 -
Blo07g00054 954 Pfam Expansin C-terminal domain 174 255 IPR007117 -
Blo07g00054 954 Pfam Expansin C-terminal domain 407 461 IPR007117 -
Blo07g00054 954 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 255 IPR007117 -
Blo07g00054 954 ProSiteProfiles Zinc finger C2H2 type domain profile. 478 500 IPR013087 -
Blo07g00054 954 Pfam C2H2-type zinc finger 478 500 - -
Blo07g00054 954 Pfam C2H2-type zinc finger 691 715 - -
Blo07g00054 954 Pfam C2H2-type zinc finger 779 803 - -
Blo07g00054 954 Coils Coil 809 836 - -
Blo07g00054 954 Gene3D Classic Zinc Finger 689 801 - -
Blo07g00054 954 ProSiteProfiles Zinc finger C2H2 type domain profile. 691 718 IPR013087 -
Blo07g00054 954 SUPERFAMILY PHL pollen allergen 405 461 IPR036749 -
Blo07g00054 954 ProSiteProfiles Zinc finger C2H2 type domain profile. 779 801 IPR013087 -
Blo07g00054 954 MobiDBLite consensus disorder prediction 645 660 - -
Blo07g00054 954 MobiDBLite consensus disorder prediction 935 954 - -
Blo07g00054 954 PANTHER EXPANSIN-B3 6 256 - -
Blo07g00054 954 PRINTS Expansin/Lol pI family signature 274 289 IPR007118 GO:0005576
Blo07g00054 954 PRINTS Expansin/Lol pI family signature 316 334 IPR007118 GO:0005576
Blo07g00054 954 PRINTS Expansin/Lol pI family signature 444 458 IPR007118 GO:0005576
Blo07g00054 954 PRINTS Expansin/Lol pI family signature 387 403 IPR007118 GO:0005576
Blo07g00054 954 PRINTS Expansin/Lol pI family signature 293 311 IPR007118 GO:0005576
Blo07g00054 954 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Blo07g00054 954 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Blo07g00054 954 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Blo07g00054 954 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Blo07g00054 954 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Blo07g00054 954 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 417 460 IPR007117 -
Blo07g00054 954 Gene3D - 167 257 IPR036749 -
Blo07g00054 954 Gene3D - 400 468 IPR036749 -
Blo07g00054 954 SMART dpbb_1 312 394 IPR007112 -
Blo07g00054 954 SMART dpbb_1 79 161 IPR007112 -
Blo07g00054 954 ProSitePatterns Zinc finger C2H2 type domain signature. 480 500 IPR013087 -
Blo07g00054 954 SUPERFAMILY Barwin-like endoglucanases 260 403 IPR036908 -
Blo07g00054 954 MobiDBLite consensus disorder prediction 639 673 - -
Blo07g00054 954 PANTHER EXPANSIN-B2-RELATED 6 256 - -
Blo07g00054 954 SMART c2h2final6 691 713 IPR013087 -
Blo07g00054 954 SMART c2h2final6 478 500 IPR013087 -
Blo07g00054 954 SMART c2h2final6 779 801 IPR013087 -
Blo07g00054 954 PANTHER EXPANSIN-B2-RELATED 264 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00081 Blo-Chr2:558897 Blo07g00054 Blo-Chr7:773870 8.17E-48 dispersed
Blo02g00119 Blo-Chr2:890731 Blo07g00054 Blo-Chr7:773870 1.02E-29 dispersed
Blo04g00689 Blo-Chr4:6286723 Blo07g00054 Blo-Chr7:773870 2.32E-55 dispersed
Blo07g00054 Blo-Chr7:773870 Blo13g00371 Blo-Chr13:21519812 1.09E-57 dispersed
Blo10g00890 Blo-Chr10:27877630 Blo07g00054 Blo-Chr7:773870 4.27E-10 dispersed
Blo13g00935 Blo-Chr13:31809209 Blo07g00054 Blo-Chr7:773870 1.37E-18 dispersed
Blo16g00175 Blo-Chr16:3921864 Blo07g00054 Blo-Chr7:773870 2.76E-16 dispersed
Blo09g00161 Blo-Chr9:5114836 Blo07g00054 Blo-Chr7:773870 3.81E-40 transposed
Blo12g00173 Blo-Chr12:11441496 Blo07g00054 Blo-Chr7:773870 1.76E-26 wgd
Blo02g00390 Blo-Chr2:4613664 Blo07g00054 Blo-Chr7:773870 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12561 PF03330 DPBB_1 1.10E-16 CL0199 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00054 - - hbr:110666950 549.666