Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00070 ATGAGAGCAAATTCTTCGGTTAGAGAGCCTGAAATTCAGAAAATATGGGATGATAACGAGGTGTTCAAGAGAGTTTCTGATAGAAATACGGGGGAAAGCTTTATCCTTCACGATGGTCCTCCATATGCCAATGGAAATCTTCACATGGGCCATGCTTTGAATAAGATTTTAAAGGATATAATCAATCGTTATAAGCTTCTTCAAAATTACAAAGTTCATTATGTGCCTGGTTGGGACTGCCATGGCCTTCCAATTGAATTGAAAGGCAAGTATATTCTTACTTTTCTGCAGTCTTTGGATAAAGATGCCAGAAAAGATCTTACGCCTATAAAATTAAGAGCAAAGGCTGCTAAATTTGCCAAAGAAACTGTGAAAACTCAGATGGCATCATTTAAGCGCTATGGAGTTTGGGCTGACTGGAAAAATCCATATCTAACTCTTGATCCAGAGTACGAAGCTGCACAGATCGAGGTGTTTGGTCAAATGGCCCTTAAAGGGTATATCTACAGAGGAAGGAAGCCAGTTCACTGGAGTCCCTCTTCACGAACGGCTCTTGCTGAAGCAGAGCTCGAGTACCCTGAAGGGCATGTTTCGAAAAGCATATATGCCATTTTTAAATTAGTTAGCGCAACTCCATCTTCAAGTGGCTTACTAGAAGAATTTTTCCCTGATCTTTGTTTGGCCATATGGACTACAACCCCATGGACTATTCCAGCCAATGCGGCTGTTGCTGTCAATGCAAAGCTTCAGTATGCCATAGTTGAATTACTACATCCAATAGAAGATTTTGCGTCATCTGCTAGAAGTAAAAAGCGAATCCCAGGAAAAATTCTGAAGGAAGAGAGAAAACCTTTTCTTATCATTGCATCAGATCTTGTGCCAAAACTAGAAGTAACATTGGGCACAAAGCTTGTTATCAAGAAAACACTGTTGGGATCAGAGCTCGAGAACTGCAGGTATGCTCATCCGATAGAAAATAGGCAATGTCCAGTTGTCATTGGAGGAGATTATATAACAACAGAATCTGGAACTGGATTGGTCCATACAGCTCCTGGACACGGTCAGGAAGATTATGTGACTGGGCTAAAGTATGGATTGCCTATACTTTCTCCTGTAGATGATGTGGGGAAGTTCACCGAAGAAGCTGGAGAGTTTAGTGGGCTTGATGTCCTTGGGGATGGTAATACTGCGGTCGTGAAATATTTGGATGAACGTTTGTCAATCATCATGGAAGAGTCATATGAGCATAAGTATCCATATGACTGGCGAACAAAGAAGCCCACAATCTTTAGGGCAACTGAGCAGTGGTTTGCATCAGTGGAAGGGTTTCGCCAGGCTGCTATTGATGGAATTGGTCAAGTAAAGTGGGTACCTCCTCAGGCTGAAAACAGAATTTTGTCAATGGCCTCCGCCCGCTCTGATTGGTGTATATCGCGCCAAAGGACATGGGGTGTCCCAATTCCAGTCTTTTATCACTTGCAATCAAAAGAGCCTCTTATGAATGAAGAGACTATCAATCACATTAAATCTATAATTGCCCAAAAGGGTAGTGATGCATGGTGGCACATGGGGGTAGAGGACCTTCTCCCTGATACATACCGTGATAAAGCCTCAGAATATGAAAAAGGAACTGATACAATGGATGTGTGGTTTGATTCAGGTAGCTCCTCATGGGCAGCAGTGTTGGGGAAGAGAAATGGCCTTTGTTTTCCAGCAGATTTGTATCTTGAAGGCACTGATCAACATCGAGGCTGGTTTCAAAGTTCTTTATTAACAAGCATTGCTACTAAAGGAGTGGCTCCATATTCCAGTGTTGTAACACATGGATTTGTATTGGATGAGAAGGGCTTAAAAATGAGTAAATCGTTGGGTAATGTTGTGGACCCACATGCTGTCATTGAAGGCGGGAAGAATCAAAAGGAAGCACCTGGCTATGGAGCTGATGTCCTGCGACTTTGGGTTTCCAGTGTAGATTATACAGGTGATGTAATGATAGGTCCTCAAGTTCTCCGCCAGATGTCAGACATCTATAGGAAGCTGCGAGGAACACTGAGATTCCTTTTAGCAAATCTACATGATTGGACGACTGAGAACACTGTTATGTATCACGAGCTTCCAGCGATTGATCAACATGCACTATTTCAACTGGAAAATGTCGTTAAAAACATTAAAGAGAGCTACGAAAGCTATCTGTTCTTTAAGATATTTCAGATCATACAACGGTTTGTAATTGTCGACTTATCAAATTTCTACTTTGATGTTGCTAAAGATCGGCTTTATGTCGGGGGCTCGGAGAGTTTTACAAGGAGAAGTTGTCAAACAGTTCTTGCTGCTCATCTCATTTCCATTTCCAGAGTAATAGCTCCCATTTTACCCCATTTAGCTGAGGATGTATGGCAGAATCTTCCCTTTTCATACAGCGGAGAAGATGGTTCTGTTTCCAAGTTTATTTTCGAGTCAAGATGGCCTGCCCTTAATCAGACGTGGCTTGCTTTTCCCATAGAAGAAACTGATTTTTGGGCTAAACTTCTTGAGCTAAGAACAGAGGTGAACAAAGTCCTCGAAATAGCTCGGACTGGTAAGTTGATCGGATCAAGCTTAGAAGCGAAAGTTTATCTTCATGCTGCAGAAGCCAGTCTAATCTCCAGGTTGAGTGAAATGTGTGCGGCTAAAAACGATGCAGACGCGTTACAACGCATATTTATTACATCCCAGGTGGAGGTTCTTCCTTCCATAGAGACAGATCTTGTAAATATACCATATACTGGAGAGTGCCTCATTCAAGGATCTAGCCGGGTTTGGATAGGTGTGTCTCGAGCCGACGGCTCAAAATGTGAACGATGCTGGAATTTCTCAACTTGGGTTGGCTCCTATATCGAGCATCCGACCCTCTGCACCCGCTGCTATGATGTCGTAGCTGCCCTCAAGCCCCTTCCAGCCATAGCTACGGTCAGCTGA 2958 42.87 MRANSSVREPEIQKIWDDNEVFKRVSDRNTGESFILHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVHYVPGWDCHGLPIELKGKYILTFLQSLDKDARKDLTPIKLRAKAAKFAKETVKTQMASFKRYGVWADWKNPYLTLDPEYEAAQIEVFGQMALKGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYAIFKLVSATPSSSGLLEEFFPDLCLAIWTTTPWTIPANAAVAVNAKLQYAIVELLHPIEDFASSARSKKRIPGKILKEERKPFLIIASDLVPKLEVTLGTKLVIKKTLLGSELENCRYAHPIENRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTGLKYGLPILSPVDDVGKFTEEAGEFSGLDVLGDGNTAVVKYLDERLSIIMEESYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAIDGIGQVKWVPPQAENRILSMASARSDWCISRQRTWGVPIPVFYHLQSKEPLMNEETINHIKSIIAQKGSDAWWHMGVEDLLPDTYRDKASEYEKGTDTMDVWFDSGSSSWAAVLGKRNGLCFPADLYLEGTDQHRGWFQSSLLTSIATKGVAPYSSVVTHGFVLDEKGLKMSKSLGNVVDPHAVIEGGKNQKEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRFLLANLHDWTTENTVMYHELPAIDQHALFQLENVVKNIKESYESYLFFKIFQIIQRFVIVDLSNFYFDVAKDRLYVGGSESFTRRSCQTVLAAHLISISRVIAPILPHLAEDVWQNLPFSYSGEDGSVSKFIFESRWPALNQTWLAFPIEETDFWAKLLELRTEVNKVLEIARTGKLIGSSLEAKVYLHAAEASLISRLSEMCAAKNDADALQRIFITSQVEVLPSIETDLVNIPYTGECLIQGSSRVWIGVSRADGSKCERCWNFSTWVGSYIEHPTLCTRCYDVVAALKPLPAIATVS 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1043462 1058442 - BLOR18002 Blo07g00070 62594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00070 985 Hamap Isoleucine--tRNA ligase [ileS]. 1 973 IPR023585 GO:0004822
Blo07g00070 985 SUPERFAMILY Nucleotidylyl transferase 1 673 - -
Blo07g00070 985 Gene3D - 490 543 - -
Blo07g00070 985 PANTHER ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL 1 971 - -
Blo07g00070 985 CDD IleRS_core 414 665 - -
Blo07g00070 985 Gene3D - 666 976 - -
Blo07g00070 985 Pfam tRNA synthetases class I (I, L, M and V) 12 664 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo07g00070 985 Gene3D - 210 382 IPR009008 GO:0002161|GO:0006418
Blo07g00070 985 Gene3D HUPs 5 209 IPR014729 -
Blo07g00070 985 Pfam Anticodon-binding domain of tRNA ligase 709 873 IPR013155 GO:0004812|GO:0006418
Blo07g00070 985 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 971 - -
Blo07g00070 985 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 41 52 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo07g00070 985 Gene3D HUPs 394 665 IPR014729 -
Blo07g00070 985 CDD Anticodon_Ia_Ile_BEm 665 851 IPR033708 GO:0000049
Blo07g00070 985 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 677 973 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo07g00070 985 TIGRFAM ileS: isoleucine--tRNA ligase 1 871 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Blo07g00070 985 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 196 418 IPR009008 GO:0002161|GO:0006418
Blo07g00070 985 PRINTS Isoleucyl-tRNA synthetase signature 416 431 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Blo07g00070 985 PRINTS Isoleucyl-tRNA synthetase signature 542 555 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Blo07g00070 985 PRINTS Isoleucyl-tRNA synthetase signature 577 586 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Blo07g00070 985 PRINTS Isoleucyl-tRNA synthetase signature 34 45 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Blo07g00070 985 PRINTS Isoleucyl-tRNA synthetase signature 228 251 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00070 K01870 IARS, ileS; isoleucyl-tRNA synthetase [EC:6.1.1.5] - jre:108995055 1675.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00070 Blo-Chr7:1043462 Blo07g00094 Blo-Chr7:1351399 1.17E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1190 . . . . . . . . . . . Cma14g01465 . Car14g01301 . . Cpe03g01233 . . . . . . . . . . . . . . . . . . . . . Cme07g01901 . Blo07g00070 Bda11g00442 . . Bpe13g00734 . Bma06g01423 Sed09g0135 . Cmo14g01504 . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007511 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00070 Blo_Chr07 FPKM 56.806171 63.917145 73.399696 77.648247 41.191868 42.14743 44.282597 61.21067 53.641972 58.935135