Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00072 ATGTCGATTTTCTCTTCTTCGCTTCAATCCGTTGCCGGCATCTCCTTTCTCCCCAGCTTCTCTTCTGCTAGTTCGTCTCTCTCTCCTTCTGTTCCTTACTTTGTTTCTCCTAAGTTTCCGTCCAGAAGACCGTTTAATTTCACCGCTAGAGTGTCTCTCTCTGGAAGCCCCGACCAAGCGGTTCCTACTGAAGTCATTGACGGATCGTCTTCCACGCCGGAGACTCTTCGACAGGCTCGGAGATCTGCTGCTTGGAAGGCAGCCAAGGCGTATCTTGAAAATGGAACCATTTACGAGGGTCGAATTGAAGGTTTTAACGCTGGGGGTTTATTGGTCCGCTTTTATTCTCTAATAGGGTTTCTTCCATTTCCCCTGTTGAGCCCTTCACATTCTTGCAAAGAACCGCGACAAAGCATTCAAGAGATTGCTAAAGGTTTAATTGGTTTGCTTGTTTCTGTGAAGGTAATTCAAGTAGATGAGGAGAGCAGAAAATTAGTCGTCTCAGAGAAGGAGGCTCTCTGGTCCAAATACTCTGGGAAAGTTAATGTAGGAGATGCTTTTGAAGCAATAGTTGGTTCCGTTGAGGATTATGGTGCCTTTGTAAACATACGATTCCCGGATGGTCTTTATCATCTTACTGGGCTAGTACATATCTCAGAGGTTTCGTGGGATTTAGTTCAGGATGTGAGAGACATCTTAAGCGAGGGAGACAAAGTGAGAGTCAAAGTCACTAATGTTGATAGGGTAAAGTCAAGGATTACACTGTCGATGAGACAGTTGGAAGAAGATCCACTTTTTGAAACGTTGGATAAAGTAATACCTCAGGACGGTTCAGCTGATCAAGCGTCTGACCTCAGCGAGGATAACAATATTGAACCTCTCCCAGGACTCAAAACAATATTTGAAGAATTATTGGAGGAAGATGGTATTGATAATGTTAAGATTACCAGACAAGGGTTTGAAAAACGTGTAGTTTCGCAAGACCTACAGCTTTGGCTTTCAAATTCACCACCCAGTGGGCGAAAGTTTACTCTTCTTGCTCGAGCCGGGAGGCAGGTGCAGGAAATACAACTGATCACATCCCTTGATCAGGAAGGTATAAAGAAAGCTTTGCAACGAGTATTGGAGCGTGTTCCATGA 1140 44.39 MSIFSSSLQSVAGISFLPSFSSASSSLSPSVPYFVSPKFPSRRPFNFTARVSLSGSPDQAVPTEVIDGSSSTPETLRQARRSAAWKAAKAYLENGTIYEGRIEGFNAGGLLVRFYSLIGFLPFPLLSPSHSCKEPRQSIQEIAKGLIGLLVSVKVIQVDEESRKLVVSEKEALWSKYSGKVNVGDAFEAIVGSVEDYGAFVNIRFPDGLYHLTGLVHISEVSWDLVQDVRDILSEGDKVRVKVTNVDRVKSRITLSMRQLEEDPLFETLDKVIPQDGSADQASDLSEDNNIEPLPGLKTIFEELLEEDGIDNVKITRQGFEKRVVSQDLQLWLSNSPPSGRKFTLLARAGRQVQEIQLITSLDQEGIKKALQRVLERVP 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1083394 1088068 + BLOR18004 Blo07g00072 62596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00072 379 ProSiteProfiles S1 domain profile. 95 170 IPR003029 GO:0003676
Blo07g00072 379 Gene3D - 85 177 IPR012340 -
Blo07g00072 379 PANTHER OS03G0844900 PROTEIN 3 379 - -
Blo07g00072 379 ProSiteProfiles S1 domain profile. 184 258 IPR003029 GO:0003676
Blo07g00072 379 MobiDBLite consensus disorder prediction 53 74 - -
Blo07g00072 379 Gene3D - 179 266 IPR012340 -
Blo07g00072 379 SUPERFAMILY Nucleic acid-binding proteins 81 173 IPR012340 -
Blo07g00072 379 SUPERFAMILY Nucleic acid-binding proteins 182 271 IPR012340 -
Blo07g00072 379 SMART S1_6 93 170 IPR022967 -
Blo07g00072 379 SMART S1_6 182 258 IPR022967 -
Blo07g00072 379 Pfam S1 RNA binding domain 180 258 IPR003029 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00072 - - - cmos:111457527 486.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00072 Blo-Chr7:1083394 Blo18g00143 Blo-Chr18:1318403 1.14E-12 dispersed
Blo07g00072 Blo-Chr7:1083394 Blo17g00131 Blo-Chr17:1207903 8.14E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0899 . . . . . . Blo07g00072 . . . . . . . . . . . . . . . . . . . . . . Cla07g01473 Cam07g1573 Cec07g1672 Cco07g1633 Clacu07g1564 Cmu07g1532 Cre07g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011616 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30