Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00080 ATGGCAACTGCTACTCTTCTGGTCTCCTCCTTCGGCTCTATCTGCTTCGGCCGTAGTCAGCATTTTAATGGCCGGACACTCGATCAGCGTCGCGCTCACGGTTCAGTCTCAGCGTCTGTCTTCCCTCTCCTCAGACCTAACCGTTCGAGGCTCGGATCCTTTTCTTTTTATTCCTGTTCTTCCCTGTATTTGAGAAAGTTTTTGGCATCTGCTTCTCTCGGAGATAGTGAGACCAGGAGTTCTACCTCCGTCTCCGACGGCGAGCTATTAGGAGAGGATTCTGCCGTGTTTGATCTTTCGGAGCAGAAGATCTCTTCCTGGATCTATTTTTGTGTAATTCTCGGCGTTGTTCTCGTTGTGCTTAACATTGTTTGGATTGATAACTCTACTGGTTTTGGCAAGGCCCTTATTGACGCCGTTTCTGGAATTTCTGATAGTCATGAGGTTGCAATGTTAATCCTAATTTTAGTCTTTGCCACTGCCCACAGTGGTTTGGCTAGTCTCAGAGATATTGGCGAGAAACTTATAGGAGAACGGGCTTACCGTGTTTTGTTTGCAGGAATTTCTTTACCATTGGCTGTTAGCACTGTCGTGTACTTTATTAACCACAGATATGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCTGGTGTTCATCAAGCTGTGTGGCTTAGTTCATTTATTTCGTTTTTCTTCCTCTACCCTTCTACCTTTAATCTATTAGAGGTAGCTGCGGTTGACAAACCAAAACTACATCTTTGGGAAACTGGGATCATGAGAATCACCCGGCATCCACAACTCATTGATAGGCCTCCAATAAGATACACCCATGCAAAGAGGCCCAAGAAGAAGGGAGAAATACCGAGAGAGGACAATTTGTTAGAGGGAGAGAAGGGCAAAAACAGTTACGAGGTTGAAGCAGTGTTTAAGCCTCCTCTAAAGTTCACCTATTCTAGAAGGAAGAAAGTTGGCGGAGATTTGGCTATTTTGTTGAGATTTTTGCCTGATGAATATACTATTTCTCTGTTCACTGATGAACATGGAGATATGATTCTGATGGTAGGACAGGTCATCTGGTGTCTAGCTCACACAGTTTGGATTGGGACCTCTGTCGCAGCGGCCGCTTCCCTCGGCCTGATTGGACATCATCTATTTGGTGTTTGGAATGGAGATAGAAGGTTGGCTAATCGATATGGGGAGGGTTTCGAAGCCGTGAAGAGTCGAACCAGCGTAATTCCATTTGCAGCCATTCTCGATGGTCGTCAAAATTTACCAAACGATTACTACAAGGAATTTATTCGACTTCCATATCTGACAATCACTGCATTGACCTTAGGTGCGTACTTCGCTCACCCACTTATGCAGGCCGCTAGTTTCCGGCTTCATTGGTAA 1395 45.23 MATATLLVSSFGSICFGRSQHFNGRTLDQRRAHGSVSASVFPLLRPNRSRLGSFSFYSCSSLYLRKFLASASLGDSETRSSTSVSDGELLGEDSAVFDLSEQKISSWIYFCVILGVVLVVLNIVWIDNSTGFGKALIDAVSGISDSHEVAMLILILVFATAHSGLASLRDIGEKLIGERAYRVLFAGISLPLAVSTVVYFINHRYDGVQLWQLQSVPGVHQAVWLSSFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQLIDRPPIRYTHAKRPKKKGEIPREDNLLEGEKGKNSYEVEAVFKPPLKFTYSRRKKVGGDLAILLRFLPDEYTISLFTDEHGDMILMVGQVIWCLAHTVWIGTSVAAAASLGLIGHHLFGVWNGDRRLANRYGEGFEAVKSRTSVIPFAAILDGRQNLPNDYYKEFIRLPYLTITALTLGAYFAHPLMQAASFRLHW 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1149520 1154788 + BLOR18012 Blo07g00080 62604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00080 464 Pfam NnrU protein 151 269 IPR009915 -
Blo07g00080 464 Pfam NnrU protein 353 455 IPR009915 -
Blo07g00080 464 PANTHER 15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC 354 464 - -
Blo07g00080 464 PANTHER 15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC 68 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00080 K15744 Z-ISO; zeta-carotene isomerase [EC:5.2.1.12] - zju:107422221 323.553
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00422 Blo07g00080 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00422 Blo-Chr2:5513704 Blo07g00080 Blo-Chr7:1149520 9.36E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0883 . . . . . Blo02g00422 Blo07g00080 . . . Bpe13g00744 Bma02g00995 Bma06g01412 . . . . . . . . . . . . . . . . Cla07g01497 Cam07g1596 Cec07g1692 Cco07g1655 Clacu07g1586 Cmu07g1552 Cre07g1929 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011013 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00080 Blo_Chr07 FPKM 3.331748 4.072631 12.549286 10.708496 6.045269 7.183087 5.959117 15.463054 16.205084 17.439934