Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00085 ATGTCGAAGAACCGAAGCCGAAGTCCTCACAAATTACTCTCTGCGAAGGCGACAGGCGACAGGCGACGAGTCCTGCTTGAAGTGTCGCCGAAGCTGGAATCTGACCTACGGTGTGAAGCGATATCCGACGCACGACCGGCGACGAGTGATTCGATGGACAATCTGTCAATAGAATTAAATCATGAAAGGAGTTTAAGCGAGGGGATGCAACTTGTTGGGGATCTTGTTGTGACTATAGCAAGTTCTGAAAGTCTGAATGAAGAACTTTACTCACTAAACGAATCAAGTGAAGAGGTAACTTTTCTCAACCGAAGCCATATTGAGAGAGGAGAGATCCAACCTAGTTTCGTCTTCAAATCGGAGGTCGGAGGTCGCAGTCGGAGCACTTCAAGTCAGACTTGTTCGAGCTTCGGAGGTCACTTCAAGCAGGAGTTCGATTCGTCTCCTTCGTCGCTTGTCGTGCGTCGGATTCCAGCTTCGGACAACGCTTCAAGCAGGAGTCCGATTCGTCTCCTTCGTCGCCCGTCGTGCGTCGGATTCCAGCTTCGAACAACGCTTCAAGCAGGAGTCCTACTCGTCGCCAATCGTGCGTCAGATATCGCTTCACACCATAGGTCAGATTCCAGCTTCGGCGACGCTTCAAGCAGGACTCGTCGCCTGTCGCCTTCGCAGAGAGTAATTCGTGACGGGACTTCGGCTTCGGTTCTTCGATGTCTTTCAAATGCAAGCAACGAGATTCAGAGTCAAGGAGATGGGTCTGTTTCCATACCAGTTCGGACTAGTGACAGACTTAGAAGAAGGCCAAACGTGTATGGTCGTGGCAGTACATATATATATTACGAAAAAAGCATCAGGCACACCAAGAAAAGGAAGACAAAAACACCAGCTTCCAGAATCGCCAAATTGATGAGTTCTGGGGGTCAACCAATGCGGAATTTAGATAATCATTTAGGAGCTCCCAATCTTCGTCGTTCTACAAGACAGAGGAGGATGCCTGCAAATTATGGAAGTTTTACAGATAGTTCTGGTTCGGAAGATGAAGATTTAATGAGACCTGCCTATCCAAAGCTGAGGAAACAAATCAATAACAACATTGTGCGAGATGGTTTGGCTTCTCCAAAGCATAAAAATACATTGGATAATAATAAACGCGCTCCTCGACGAGAAGGACTACGACCTCGTCGTTCAAAAGTAGTAGTTGGGGAACAACTAAGTTTGGAATCTGACGGTGAGCAAGATACTTCAGAAGAGAAGGTTGACCAAGATGAAACTGAAAATGTGAATGATTTGGAGGATAATGATGGAGATGATGGTCAAAATGAAGAAGAATGTGAGGATGAGGATGAGGGCGAAGCAGATGGTGATGATGAAGATGGCGAAGAGCAAGAGGAGGGAAGGAGACGATATGATCTTCGTAATCGTGCAGAAGTGCGCAGGCTATCTATGGAAGAAGGTAAGGGAAGACCAAGGTCTCCTCGAAGGGTTTTGCATCAAGGAATGGGATTGAAAGTTGGTAGAGAAATTCGTAAGGGTGGATCAAGAGTTCATAAGCGTCATCGTCTACCAAGGGTTGAAGATTCTGATGATTCTCTTTTGGTGGATGAGCTAGACCAAGCTCCTTCCATTCCATGGGGGCGAAGCGGGAGCAGATCTGGACCACCTTGGCTCTTTGGGGGATTAGATATTCAAGGTACAACTGCATGGGGATTGAATATGGCTGCTTCTGGTTGGGGTCATCAGAGTGATGCTTTCTCTTCCCTGACTTCTGGAATTCAAACTGCTGGTCCAAGTTCAAAAGGAGGGGCAGACATCCAACCATTACAGGTTGATGAAAGTGTCAGTTTCAATGATATAGGTGGTCTTTCTGAATACATTGATGCTTTAAAAGAGATGGTTTTCTTTCCCCTCTTATATCCTGATTTCTTTTCAAGTTATCACATCACCCCACCAAGAGGGGTATTATTATGTGGTCCTCCCGGCACAGGGAAAACGCTTATTGCGAGGGCCCTTGCGTGTGCTGCATCCAAGGCTGGCCAGAAGGTCAGTTTTTATATGCGTAAGGGTGCTGATGTGCTTAGTAAATGGGTTGGTGAGGCTGAAAGACAATTGAAACTATTATTTGAGGAAGCGCAAAAGAATCAGCCTTCCATCATATTTTTTGATGAAATTGATGGACTTGCTCCAGTAAGGTCCAGCAAACAAGAGCAAATTCACAATTCTATTGTTTCTACTTTACTAGCATTGATGGATGGTCTTGACTCTCGTGGACAAGTAGTATTAATTGGTGCTACCAATCGGATTGATGCTATAGATGGGGCTTTACGTCGTCCTGGTCGCTTTGATCGTGAATTTAACTTTCCTTTGCCTGGTTGTGATGCACGTGCTGAAATATTAGACATTCACTCACGAAAATGGAAACATTCTCCTTCAAAGGAACTCAGACTAGAACTTGCAGCAACATGTGTAGGATATTGTGGTGCTGATTTGAAAGCATTATGCACTGAGGCTGCAATTCGTGCATTCCGAGAAAAATATCCTCAAGTTTACACGAGCGATGACAAATTTCTGATAGACGTTGATTCTGTGAAGGTTGAAAAGTATCATTTTGTTGAAGCCATGTCGACAATAACTCCTGCTGCACATAGAGGCACTGTTGTTCATTCCAGACCTCTGTCTTTGGTTGTTGCACCATGTTTAAAATCCCATCTCCAGAAAACCATGAATTTTATATTCGATGTATTTCCTCCTGTTGGGATGTCTTCAGAATTAGCAAAACTTTCTTTCCTTTCATATGGTTCCGCAATTCCTCTTGTGTACAGGCCTCGGCTTCTCCTCTGTGGAAGTGAAAGTGTTGGGCTGGATCATCTTGGACCTGCTGTTTTACATGAATTGGAGAAGTTTCCCGTTCATTCATTAGGACTCCCATCGCTGCTTTCAGATCCTAGTGCAAAGACTCCTGAGGAAGCCTTGGTACACATATTTGGTGAAGCGAGAAGGACAACACCATCAATTCTATACTTACCTCAGTTCCATCATTGGTGGGAGACCGCAGACGAACAACTTAGGGCGGTTCTGCTTTCATTATTAGAAGAACTACCATCTGATCTACCTATATTATTGCTTGGAACATCTTCTACACTCGATGAAATTGATGAGAAAGCTTCTTTTGTATTTCCTCGTAGTTGCATCTATAAAGTCGATCAACCATCTAAAGAAGACAGGTCCCTGTTTGTTGATAGTTTAATTGAAGCTGCTTTTTCAGTCTTGGTGGGGGGCATGGCAAAAAACTCCCAAGAGTCAACGTCCCTTCCTCAACTTCCTAAGGCTCCTAGAGTAGAAAGTGGTCCAAAGGCCTCTGAGTTAAGAGCTAAGGTAGAAGCTGAACAGCATGCGCTTCGCCGAATGCGGATGTGTCTCAGAGATGTTTGCAACAGGATTTTGTATGACAAAAGATTTAGTGTATTCCATTATCCAGTCTTAGATGAAGATGCTCCAAACTATCGCTTGGTTATTCAAAATCCCATGGATGTTGCTACTTTACTGCAGCGAGTTGACTCCGGGCTATACATTACATCTTCAGCATTCATGCAAGATGTAGATCTTATTGTTTCTAATGCAAAGGCTTATAATGGAGATGACTACAATGGTGCTAGGATCGTCAGTAGAGCATATGAGCTTCGAGATGCAGTGCAAGGAATGCTGTCACAAATGGATCCTGGGCTAGTCACAATCTGCGACAAGATTGTTGTTCAAGGAGGTCCTTTGCCCATTCCTGCTGATTTAGTGGGATCACCCTTCACATCAGCTCCAGTTGCGCAGCTGGGTACTGTAACTAGGGCGAGTGCACGTCTTCGTAATGTTCAACCAGAAGTTAATATGGATCAAAGCTATGAGGCACTGAAACGACCTAAGAAGAATGTTGATTCTGCACATCATGCAGTTGGAGAAGATAAGTTGCGGAATCAAGACTCTTCACCCCAAAAGGCAACCCAAGAACCGGAGACTAATGAAGCAAATCCAGCAGCAGCCGAACCCGAACACGAACCCGATCCCATTCTGGTCGACAACAGTCACGACTCAACCTGCAAAGAGGCTCCTGATCTTGCTGATGCAAATGGGTCCCATGATTTGACAATGTTAGGTGGTGATATTTGCGGCCAAATCGAATCTCTAAAGCAGTTATTTGTGGAGAGAACCGAAAACTATGGAATTCCACAGCTTGAGAGGGTGTACACGAGGATCATGAAGGGAGTTTTTGAATCCAAAGGCACAAAAAAGGATGATATGAAGCCTTCCATTTTGAAGTTTTTATTTAAATTTGCAGAGGATGGAAGAAATTTCTGA 4344 44.54 MSKNRSRSPHKLLSAKATGDRRRVLLEVSPKLESDLRCEAISDARPATSDSMDNLSIELNHERSLSEGMQLVGDLVVTIASSESLNEELYSLNESSEEVTFLNRSHIERGEIQPSFVFKSEVGGRSRSTSSQTCSSFGGHFKQEFDSSPSSLVVRRIPASDNASSRSPIRLLRRPSCVGFQLRTTLQAGVLLVANRASDIASHHRSDSSFGDASSRTRRLSPSQRVIRDGTSASVLRCLSNASNEIQSQGDGSVSIPVRTSDRLRRRPNVYGRGSTYIYYEKSIRHTKKRKTKTPASRIAKLMSSGGQPMRNLDNHLGAPNLRRSTRQRRMPANYGSFTDSSGSEDEDLMRPAYPKLRKQINNNIVRDGLASPKHKNTLDNNKRAPRREGLRPRRSKVVVGEQLSLESDGEQDTSEEKVDQDETENVNDLEDNDGDDGQNEEECEDEDEGEADGDDEDGEEQEEGRRRYDLRNRAEVRRLSMEEGKGRPRSPRRVLHQGMGLKVGREIRKGGSRVHKRHRLPRVEDSDDSLLVDELDQAPSIPWGRSGSRSGPPWLFGGLDIQGTTAWGLNMAASGWGHQSDAFSSLTSGIQTAGPSSKGGADIQPLQVDESVSFNDIGGLSEYIDALKEMVFFPLLYPDFFSSYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQKNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILDIHSRKWKHSPSKELRLELAATCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFVEAMSTITPAAHRGTVVHSRPLSLVVAPCLKSHLQKTMNFIFDVFPPVGMSSELAKLSFLSYGSAIPLVYRPRLLLCGSESVGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHHWWETADEQLRAVLLSLLEELPSDLPILLLGTSSTLDEIDEKASFVFPRSCIYKVDQPSKEDRSLFVDSLIEAAFSVLVGGMAKNSQESTSLPQLPKAPRVESGPKASELRAKVEAEQHALRRMRMCLRDVCNRILYDKRFSVFHYPVLDEDAPNYRLVIQNPMDVATLLQRVDSGLYITSSAFMQDVDLIVSNAKAYNGDDYNGARIVSRAYELRDAVQGMLSQMDPGLVTICDKIVVQGGPLPIPADLVGSPFTSAPVAQLGTVTRASARLRNVQPEVNMDQSYEALKRPKKNVDSAHHAVGEDKLRNQDSSPQKATQEPETNEANPAAAEPEHEPDPILVDNSHDSTCKEAPDLADANGSHDLTMLGGDICGQIESLKQLFVERTENYGIPQLERVYTRIMKGVFESKGTKKDDMKPSILKFLFKFAEDGRNF 1447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1246568 1257673 + BLOR18017 Blo07g00085 62609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00085 1447 MobiDBLite consensus disorder prediction 373 396 - -
Blo07g00085 1447 ProSiteProfiles Bromodomain profile. 1155 1217 IPR001487 GO:0005515
Blo07g00085 1447 MobiDBLite consensus disorder prediction 203 225 - -
Blo07g00085 1447 Pfam AAA+ lid domain 816 852 IPR041569 -
Blo07g00085 1447 MobiDBLite consensus disorder prediction 319 343 - -
Blo07g00085 1447 Gene3D - 789 874 - -
Blo07g00085 1447 MobiDBLite consensus disorder prediction 1297 1323 - -
Blo07g00085 1447 Gene3D - 611 881 IPR027417 -
Blo07g00085 1447 PANTHER BNAC08G44480D PROTEIN 247 1442 - -
Blo07g00085 1447 MobiDBLite consensus disorder prediction 409 460 - -
Blo07g00085 1447 ProSitePatterns AAA-protein family signature. 758 776 IPR003960 GO:0005524|GO:0016887
Blo07g00085 1447 MobiDBLite consensus disorder prediction 1098 1120 - -
Blo07g00085 1447 SUPERFAMILY Bromodomain 1120 1242 IPR036427 GO:0005515
Blo07g00085 1447 CDD Bromo_AAA 1132 1242 - -
Blo07g00085 1447 Gene3D - 929 1082 IPR027417 -
Blo07g00085 1447 PRINTS Bromodomain signature 1180 1198 IPR001487 GO:0005515
Blo07g00085 1447 PRINTS Bromodomain signature 1164 1180 IPR001487 GO:0005515
Blo07g00085 1447 PRINTS Bromodomain signature 1198 1217 IPR001487 GO:0005515
Blo07g00085 1447 SMART AAA_5 649 790 IPR003593 -
Blo07g00085 1447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 877 IPR027417 -
Blo07g00085 1447 Gene3D - 1124 1250 IPR036427 GO:0005515
Blo07g00085 1447 MobiDBLite consensus disorder prediction 305 349 - -
Blo07g00085 1447 Pfam Bromodomain 1144 1213 IPR001487 GO:0005515
Blo07g00085 1447 Pfam ATPase family associated with various cellular activities (AAA) 653 788 IPR003959 GO:0005524|GO:0016887
Blo07g00085 1447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 937 1085 IPR027417 -
Blo07g00085 1447 MobiDBLite consensus disorder prediction 365 471 - -
Blo07g00085 1447 PANTHER AAA DOMAIN-CONTAINING 247 1442 IPR045199 -
Blo07g00085 1447 SMART bromo_6 1132 1239 IPR001487 GO:0005515
Blo07g00085 1447 CDD AAA 649 788 - -
Blo07g00085 1447 MobiDBLite consensus disorder prediction 1285 1369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00085 K22531 ATAD2; ATPase family AAA domain-containing protein 2 [EC:3.6.1.-] - tcc:18602557 1691.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00430 Blo-Chr2:5681161 Blo07g00085 Blo-Chr7:1246568 0 dispersed
Blo06g01094 Blo-Chr6:34243239 Blo07g00085 Blo-Chr7:1246568 7.14E-11 dispersed
Blo07g00085 Blo-Chr7:1246568 Blo10g00749 Blo-Chr10:23539829 3.65E-79 dispersed
Blo07g00085 Blo-Chr7:1246568 Blo08g00011 Blo-Chr8:116937 1.66E-41 transposed
Blo07g00085 Blo-Chr7:1246568 Blo01g01177 Blo-Chr1:43346969 3.75E-40 transposed
Blo07g00085 Blo-Chr7:1246568 Blo14g00191 Blo-Chr14:1584858 4.56E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00085 Blo_Chr07 FPKM 4.717002 4.759008 4.401889 4.619583 9.138623 7.932956 9.807036 7.056838 5.345555 6.884279