Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00095 ATGTCGCCGACTCGCCTACTTTTTGTTTCACGGATTACGAGATCCATTGTCTCCCTACATTCTTCTCCTTTTTCTTTTGCTTCTTCTTCTTTCTCTTCTGCTGCAGCCACTCAGGCTGAGCGAACGATTAGAGAAGGCGCTAGAAACGACTGGACTCGGCAGGAGATTAGGGACGTTTACGACTCTCCGGTTCTCGATCTGCTTTTTCATGGAGCACAAGTTCACAGGCATGCTCACAATTTTAGAGAGGTGCAGCAGTGTACCCTTCTCTCAATCAAAACTGGTGGATGCAGTGAAGATTGTTCATATTGCCCCCAGTCCTCCAGATACAACACTGGGTTGAAAGCTCAAAAACTTATGATTAAGGATGCTGTTTTAGAGGCAGCACAGAAGATTTTCCTTTACGCAAAAGAAGCTGGTAGTACGCGTTTTTGTATGGGTGCTGCATGGAGGGACACAATAGGCAGAAAGACCAACTTCAACCAGATCCTTGAATATGTTAAAGAAATTAGAGGTATGGGGATGGAAGTTTGCTGCACCTTGGGCATGATAGAGAAGCAGCAAGCTATAGAACTCAAAAATGCAGGCCTCACAGCTTATAATCATAATCTTGATACGTCCAGGGAATACTACTCAAACATCATTACGACAAGGACTTATGATGAGCGTTTGAAAACTCTAGAGTTTGTCCGTGATGCCGGGATAAATGTCTGCTCAGGAGGAATAATTGGGCTCGGAGAAGCAGAGGAAGACCGTGTCGGTTTACTGCATACTTTAGCAACATTACCCACACATCCGGAGAGTGTGCCAATTAATGCACTGGTAGCAGTGAAGGGCACGCCTCTGGAAAATCAGAAGCCAGTTGAAATATGGGAGATGATTAGAATGATCGCCACAGCACGGATTGTGATGCCAGGAGCAATGGTGAGGTTATCTGCAGGTAGAGTTCGGTTCTCCATGCCTGAGCAGGCATTATGCTTTCTCGCCGGAGCCAATTCCATCTTCACCGGAGAGAAGCTTCTGACAACACCAAATAACGATTTTGACACAGATCAACTCATGTTTAAAATGCTTGGTCTGACTCCAAAGGCACCCACTTTCTCTGATGAACCAAGAAAGGCCTTTGAAGAAGATAATTGTGAAGAAGCCATTTCCAGTTCTGGTTGA 1167 45.24 MSPTRLLFVSRITRSIVSLHSSPFSFASSSFSSAAATQAERTIREGARNDWTRQEIRDVYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYNTGLKAQKLMIKDAVLEAAQKIFLYAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKEIRGMGMEVCCTLGMIEKQQAIELKNAGLTAYNHNLDTSREYYSNIITTRTYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVAVKGTPLENQKPVEIWEMIRMIATARIVMPGAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDTDQLMFKMLGLTPKAPTFSDEPRKAFEEDNCEEAISSSG 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1370597 1375891 - BLOR18027 Blo07g00095 62619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00095 388 Pfam Radical SAM superfamily 94 256 IPR007197 GO:0003824|GO:0051536
Blo07g00095 388 PIRSF Biotin_synth 32 369 IPR024177 -
Blo07g00095 388 PANTHER BIOTIN SYNTHASE 28 385 IPR002684 GO:0004076|GO:0009102
Blo07g00095 388 SFLD biotin synthase 44 366 IPR024177 -
Blo07g00095 388 ProSiteProfiles Radical SAM core domain profile. 82 315 IPR007197 GO:0003824|GO:0051536
Blo07g00095 388 SMART BATS_2 270 362 IPR010722 -
Blo07g00095 388 MobiDBLite consensus disorder prediction 368 388 - -
Blo07g00095 388 Gene3D Aldolase class I 48 364 IPR013785 -
Blo07g00095 388 SUPERFAMILY Radical SAM enzymes 49 362 - -
Blo07g00095 388 Hamap Biotin synthase [bioB]. 49 363 IPR002684 GO:0004076|GO:0009102
Blo07g00095 388 Pfam Biotin and Thiamin Synthesis associated domain 270 360 IPR010722 -
Blo07g00095 388 CDD Radical_SAM 94 298 - -
Blo07g00095 388 TIGRFAM bioB: biotin synthase 59 360 IPR002684 GO:0004076|GO:0009102
Blo07g00095 388 SFLD biotin synthase like 44 366 - -
Blo07g00095 388 SMART MiaB 87 299 IPR006638 GO:0003824|GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00095 K01012 bioB; biotin synthase [EC:2.8.1.6] - egr:104425844 632.098
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010238 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00095 Blo_Chr07 FPKM 30.714752 30.349377 29.063599 35.85033 35.945885 35.792091 37.446053 34.126015 31.301996 33.567078