Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo07g00096 ATGCAGGCACATGCCCCTCCTCCCGGTTACTTTGTGCGATTGGAAAATACAAGTGCTGTAGACGACCTATATCTAAGGAAAAAGACGAAAATGCGCAAGTGGTTGTGTTGTTCATGTCATGTCGAAGAGTCCCACCCGGAAGCTGAAAAACAGCACCTCAAAAACCCTAGGAATTATGGAGATGGACGTCCGAAGGGACAAAAGGCACCTGCTCGGGCCAAAGTTGAACCGCAAAAGGCCCCACCGCCAATACAAGTGCCTGCATTGTCGCTGGCGGAACTGAAAGAAAAGACTGATAATTTTGGGTCCAAAGCGTTGATTGGAGAAGGATCTTACGGGAGAGTTTATTACGCAACCTTAGATAATGGGAAAACAATGGCAGTAAAGAAGCTTGATGTTTCCTCCGAACCCGACTCGACTGCTGATTTTTTGACTCAGGTTTCTATGGTTTCAAGGCTAAAACATGACAATTTTGTGGAGTTGCTCGGTTATTGTGTCGAAGGAAATCTTCGTATACTTGGATTTGAGTTTGCAACCATGGGTTCTCTACATGATGTCTTGCATGGAAGAAAGGGAGTGCAAGGAGCCCAACCAGGGCCTGTGCTTGATTGGTCTCAGCGGGTGAGAATAGCAGTCGATGCAGCCAGAGGGTTGGAATATTTGCATGAGAAAGTTCAACCTTCTGCAATACACAGAGATGTTAGATCCAGCAATGTCCTTCTCTTTGAGGACTTCAAAGCGAAGATTGCTGATTTTAATCTTTCCAATCAAACTCCTGATATGGCTGCCCGTCTTCATTCTACTCGAGTTTTGGGAACCTTCGGCTATCACGCTCCAGAGTATGCCATGACTGGACAATTGACGCAAAAGAGCGATGTGTACAGCTTTGGGGTCGTCTTGCTCGAGCTTCTCACTGGGAGAAAACCCGTTGATCATACGATGCCTCGTGGACAACAGAGTCTCGTGACGTGGGCAACTCCAAGACTGAGTGAAGACAAAGTTAGGCAATGTGTTGATCCAAAGCTGAAAGGGGAGTATCCCCCAAAAGCAATAGCAAAGGCAATTAGCGGCGGTGGCGGCACTTTGCGTACAGTACGAAGCGGAGTTTCGGCCAAACATGAGCATTGTCGTGAAGGCTCTCCAACCGCTCGTGAAGCCTCCACCGGCCCCTGTGCTAGACTCGTGAAGATTGGATTAGGGCTGACAGGATTTGGCATATTTTTCTCATTCCTGGGAATTATCTTCTTTTTTGACAAGGGATTACTTGCCATGGGAAATATCCTATTTTTCTCAGGAGTGACCCTCACCATTGGTCTTAAGTCTACAATGCAGTTCTTCACAAAACGCCAGAATTTCAAGGGAACGATTTCATTTGGTGTTGGGTTCTTTTTTGTTGTCATTGGATGGCCTATTATTGGTATGATATTGGAAGCATATGGATTCATTGTACTATTTAGCGGCTTCTGGCCAACTCTAGCAGTTTTTCTCCAGAAGATACCAATTCTTGGATGGTTATTCCAACAGCCATATATTAGATCGGTTTTGTTGCATGATTGGTGGCTTGTGAGGGCCGGTGATGGCGAAGGAGAGGGCTTGGCTGTTGGAGGGTTTACTTTCAGAGAAAGAGCTGGGTTAAGAGTAATCCGCTCTACAGAAATTTCTGAAAGACATGAAGCCACCATCCTTAAGGCAAAAGATGGTATCACCTTCACAATAAGTGGTTTCATAAATAGGTCTCGTACGATGGAAAATGGTTTTCCTCCAGAGTCAGCTGGTAAGATGATGGGAGCATGTACTGGAAAGATGATGGCGACGAATTGGCAAACGATGACGGGAGAGGTAGTGGATGAGTGTGGTTCTCTGCATGGAAGTTACGAAGAGCCTGCCAGCCAACCACAGTGCCGGAATAATTCGGCGGTTCGGGTTTTGCATGGCGGTGCTGGGCTTCAAATGGTGGCGATTCGGCTGCGCTTTGTCCAATGGATTGGGGTTCGTGAAGGGCTGGCTCTTTTAACTGGGCTGGGCTTCTTATGTTTGGTAGTTGATGAGCTGATATTTTTTTCAGTAGACAGGGCTTTGTTATGGCAGTCGGGCTGTTCTTCCCTTGTAGTAGAGCTGGGCTTTATGCACTGGGCTGTGTTCGGCTATGGGTAG 2154 46.8 MQAHAPPPGYFVRLENTSAVDDLYLRKKTKMRKWLCCSCHVEESHPEAEKQHLKNPRNYGDGRPKGQKAPARAKVEPQKAPPPIQVPALSLAELKEKTDNFGSKALIGEGSYGRVYYATLDNGKTMAVKKLDVSSEPDSTADFLTQVSMVSRLKHDNFVELLGYCVEGNLRILGFEFATMGSLHDVLHGRKGVQGAQPGPVLDWSQRVRIAVDAARGLEYLHEKVQPSAIHRDVRSSNVLLFEDFKAKIADFNLSNQTPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVRQCVDPKLKGEYPPKAIAKAISGGGGTLRTVRSGVSAKHEHCREGSPTAREASTGPCARLVKIGLGLTGFGIFFSFLGIIFFFDKGLLAMGNILFFSGVTLTIGLKSTMQFFTKRQNFKGTISFGVGFFFVVIGWPIIGMILEAYGFIVLFSGFWPTLAVFLQKIPILGWLFQQPYIRSVLLHDWWLVRAGDGEGEGLAVGGFTFRERAGLRVIRSTEISERHEATILKAKDGITFTISGFINRSRTMENGFPPESAGKMMGACTGKMMATNWQTMTGEVVDECGSLHGSYEEPASQPQCRNNSAVRVLHGGAGLQMVAIRLRFVQWIGVREGLALLTGLGFLCLVVDELIFFSVDRALLWQSGCSSLVVELGFMHWAVFGYG 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1376738 1391962 - BLOR18028 Blo07g00096 62620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo07g00096 717 SUPERFAMILY Protein kinase-like (PK-like) 82 353 IPR011009 -
Blo07g00096 717 SMART tyrkin_6 101 346 IPR020635 GO:0004713|GO:0006468
Blo07g00096 717 MobiDBLite consensus disorder prediction 45 82 - -
Blo07g00096 717 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Blo07g00096 717 MobiDBLite consensus disorder prediction 45 72 - -
Blo07g00096 717 Pfam Got1/Sft2-like family 401 500 IPR007305 GO:0016192
Blo07g00096 717 Gene3D Transferase(Phosphotransferase) domain 1 179 366 - -
Blo07g00096 717 Gene3D Phosphorylase Kinase; domain 1 68 177 - -
Blo07g00096 717 Pfam SANTA (SANT Associated) 514 591 IPR015216 -
Blo07g00096 717 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 20 354 - -
Blo07g00096 717 ProSiteProfiles Protein kinase domain profile. 101 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo07g00096 717 Pfam Protein tyrosine and serine/threonine kinase 106 314 IPR001245 GO:0004672|GO:0006468
Blo07g00096 717 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 20 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo07g00096 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - fve:101298506 614.764
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00458 Blo07g00096 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00293 Blo-Chr1:3666334 Blo07g00096 Blo-Chr7:1376738 0 dispersed
Blo07g00096 Blo-Chr7:1376738 Blo12g00615 Blo-Chr12:24422904 4.44E-148 dispersed
Blo07g01183 Blo-Chr7:31689237 Blo07g00096 Blo-Chr7:1376738 8.36E-14 transposed
Blo12g00146 Blo-Chr12:10172077 Blo07g00096 Blo-Chr7:1376738 0 wgd
Blo02g00436 Blo-Chr2:5822146 Blo07g00096 Blo-Chr7:1376738 2.24E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g252 . . . . . Bpe14g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00096 Bda11g00468 . . Bpe13g00731 Bma02g00954 Bma06g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033558 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12564 PF07714 PK_Tyr_Ser-Thr 2.30E-41 CL0016 Blo TR
84365 PF07714 PK_Tyr_Ser-Thr 2.30E-41 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo07g00096 Blo_Chr07 FPKM 10.307521 11.327474 13.108891 12.566726 16.619822 17.086376 18.073839 13.808316 12.123996 13.368819